Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15e19
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    30   1.1  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       30   1.1  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       30   1.1  
AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical ...    28   4.3  
AF106575-4|AAC78172.2|  548|Caenorhabditis elegans Hypothetical ...    28   4.3  
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un...    27   7.5  
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un...    27   7.5  
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.        27   7.5  
Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U88314-11|AAP68950.1|  241|Caenorhabditis elegans Hypothetical p...    27   9.9  
U88314-10|AAP68949.1|  344|Caenorhabditis elegans Hypothetical p...    27   9.9  
AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 135 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 257
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 135 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 257
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 135 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 257
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical
           protein F14F4.1 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 156 CAVRKLFKQANSKHVFDHFGCSSNYCFNN 242
           C  R+ F +   K  F++F CSS    NN
Sbjct: 336 CRSRRSFTEVTKKRSFENFECSSTATMNN 364


>AF106575-4|AAC78172.2|  548|Caenorhabditis elegans Hypothetical
           protein K04F1.13 protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +1

Query: 481 TAMKKIQKTYELAEFDLKNLSSLESYETL 567
           T++KKI+  +E+    L++LS LE+ ET+
Sbjct: 217 TSLKKIEGVFEVYNTSLQDLSFLENLETI 245


>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 2, isoform a protein.
          Length = 1837

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 436  NVSNATKFERSPKL*TAMKKIQKT-YELAEFDLKNLSSLESYETLKI 573
            +++NA   E + K  TA K +QKT  +LA  + + L+ LE+   +++
Sbjct: 978  DIANARTKEEAEKFATASKNLQKTKADLAMMEAERLTLLEARNRVEV 1024


>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 2, isoform b protein.
          Length = 1839

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 436  NVSNATKFERSPKL*TAMKKIQKT-YELAEFDLKNLSSLESYETLKI 573
            +++NA   E + K  TA K +QKT  +LA  + + L+ LE+   +++
Sbjct: 978  DIANARTKEEAEKFATASKNLQKTKADLAMMEAERLTLLEARNRVEV 1024


>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
          Length = 1839

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 436  NVSNATKFERSPKL*TAMKKIQKT-YELAEFDLKNLSSLESYETLKI 573
            +++NA   E + K  TA K +QKT  +LA  + + L+ LE+   +++
Sbjct: 978  DIANARTKEEAEKFATASKNLQKTKADLAMMEAERLTLLEARNRVEV 1024


>Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical
           protein T19C9.1 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 204 DHFGCSSNYCFNNYVCSI 257
           DHF C+ N CF +Y  S+
Sbjct: 158 DHFKCTVNACFYSYTLSV 175


>U88314-11|AAP68950.1|  241|Caenorhabditis elegans Hypothetical
           protein C46H11.10b protein.
          Length = 241

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 18/46 (39%), Positives = 19/46 (41%)
 Frame = +1

Query: 448 ATKFERSPKL*TAMKKIQKTYELAEFDLKNLSSLESYETLKIKLAL 585
           A KF   PK  T  K  Q TY    FDLK    LE      + L L
Sbjct: 94  AEKFR--PKHLTLFKPAQNTYNKGFFDLKKFPQLEELRMYGVPLDL 137


>U88314-10|AAP68949.1|  344|Caenorhabditis elegans Hypothetical
           protein C46H11.10a protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 18/46 (39%), Positives = 19/46 (41%)
 Frame = +1

Query: 448 ATKFERSPKL*TAMKKIQKTYELAEFDLKNLSSLESYETLKIKLAL 585
           A KF   PK  T  K  Q TY    FDLK    LE      + L L
Sbjct: 197 AEKFR--PKHLTLFKPAQNTYNKGFFDLKKFPQLEELRMYGVPLDL 240


>AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical
           protein F08E10.2 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 204 DHFGCSSNYCFNNYVCSI 257
           DHF C+ N CF +Y  S+
Sbjct: 158 DHFKCTVNACFYSYTLSV 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,782,229
Number of Sequences: 27780
Number of extensions: 187520
Number of successful extensions: 497
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)