Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15e14
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    30   0.22 
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    27   1.5  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   3.5  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    25   4.6  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   6.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   6.1  

>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 244 AQRGRPATRPTGRVLRSQQQKPVPSREQLDAELDQYMASS 363
           AQR     R   R L  +  KP+P+  + DAEL +Y+  S
Sbjct: 124 AQRAYRENRARERQLLLENGKPIPASLEEDAELPEYLTKS 163


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 337 ELDQYMASSKSALDLEL---EAYMREAELLE 420
           ELDQY+A SK +L LE+   E Y+    +LE
Sbjct: 421 ELDQYIALSKKSLALEMTVNEIYLTHEIILE 451


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -1

Query: 474 LFTLTLIT-IHFNTHHYWSLK 415
           LF +T++  + FN  +YWSLK
Sbjct: 240 LFNITMLRLVSFNMDYYWSLK 260


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 289 RSQQQKPVPSREQLDAELDQYMASSK 366
           R    +P  S E+LD E+D Y  S++
Sbjct: 172 RRTPNRPKKSAEELDKEMDDYFGSNE 197


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 286 LRSQQQKPVPSREQLDAELDQYMASSKSALDLELEAYMREAELLE*PVVMSVEMNSD 456
           LR++ +       Q D     Y     +AL   LEA  RE ELL+   V ++EM  +
Sbjct: 505 LRAELEVVKAMNSQPDDPDSDYAIKQNNALQNRLEALTRENELLQ-SRVTTLEMEKE 560


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 192 PDCPRPASAAPEPP 151
           P  P PA+AAP PP
Sbjct: 9   PPAPAPAAAAPAPP 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,850
Number of Sequences: 5004
Number of extensions: 26316
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)