Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15e14
(489 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0744 - 20659326-20659580,20659748-20660005,20660103-206615... 34 0.070
04_04_0347 + 24564589-24565296 29 2.0
07_03_0682 + 20667365-20667655 29 2.6
03_04_0188 - 18241815-18242477 28 3.5
12_02_0682 - 21923334-21923626,21923684-21923733,21923982-219240... 28 4.6
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 28 4.6
01_03_0062 - 12140514-12141851 28 4.6
07_03_0068 - 13021090-13021197,13021319-13021354,13022245-130223... 27 6.1
02_05_0435 - 28958422-28958665,28959328-28959462,28960056-289602... 27 6.1
02_02_0662 - 12736904-12737214,12737632-12737914 27 6.1
01_05_0713 - 24548701-24549930 27 6.1
03_01_0515 - 3864796-3865425 27 8.1
01_05_0598 + 23548081-23548186,23548277-23549508,23549621-235496... 27 8.1
>08_02_0744 -
20659326-20659580,20659748-20660005,20660103-20661575,
20661677-20661835,20661948-20662074,20662155-20662486,
20662574-20663383,20663772-20664110,20664187-20664340,
20664427-20665143,20665699-20665967
Length = 1630
Score = 33.9 bits (74), Expect = 0.070
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 451 YSFQHSSLLVTQAARLLSCRLLTQDPGRTWSW-PCIGPVPRPAVP 320
Y+ QH SL ++ RLLS +L + GR W W C+ P+ VP
Sbjct: 781 YTHQHGSLTIS-VRRLLSQKLPGERDGRIWMWHRCLKCEPKDGVP 824
>04_04_0347 + 24564589-24565296
Length = 235
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Frame = -3
Query: 469 HFNTHHYSFQHSSLLVTQAARLLSCRLLTQDPG---RTWSWPCIGPVPRPAV 323
H + HH H T A S P +W WP P P PAV
Sbjct: 94 HHHHHHGHHHHRHATATAPAHAPSSHHDRHAPAPVHSSWPWPAHAPAPAPAV 145
>07_03_0682 + 20667365-20667655
Length = 96
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 192 GKIQSRRRPAVRARHQGGAAR 254
G+ Q+RRRP V AR GG+ R
Sbjct: 22 GQSQTRRRPVVEARQGGGSRR 42
>03_04_0188 - 18241815-18242477
Length = 220
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 98 IGQHRSVTCQWLVPGDHCGGSGAAE--AGRGQSGEDS 202
+G H+S + PGDH G + AA+ A G S EDS
Sbjct: 88 LGGHKSSHRKPPSPGDHYGAAAAAQQLASAGDSKEDS 124
>12_02_0682 -
21923334-21923626,21923684-21923733,21923982-21924041,
21924081-21924235
Length = 185
Score = 27.9 bits (59), Expect = 4.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 177 PASAAPEPPQWSPGTSH 127
PA+ +PP WSPG +H
Sbjct: 152 PAANRQQPPAWSPGRNH 168
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -3
Query: 385 TQDPGRTWSWPCIGPVPRPAVPCWAP 308
T DP R WP VPR P W P
Sbjct: 298 TMDPSRVPVWPPRHLVPRGPAPPWVP 323
>01_03_0062 - 12140514-12141851
Length = 445
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 216 PAVRARHQGGAARPPR 263
PA R RH GG +RPPR
Sbjct: 239 PARRHRHGGGGSRPPR 254
>07_03_0068 -
13021090-13021197,13021319-13021354,13022245-13022322,
13022412-13022514,13022732-13022817,13023036-13023090,
13023186-13023250,13023997-13024086,13024415-13024530,
13024701-13024710
Length = 248
Score = 27.5 bits (58), Expect = 6.1
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 298 QQKPVPSREQLDAELDQ-YMASSKSALDLELEAYMREA 408
+QK R D EL Y+ +SALD+EL Y+ EA
Sbjct: 71 KQKCTKLRPAADEELPSAYIEDFRSALDVELSKYVGEA 108
>02_05_0435 -
28958422-28958665,28959328-28959462,28960056-28960211,
28960287-28961092,28961177-28961254,28961809-28961883,
28962127-28962215,28962735-28962843,28963007-28963086,
28963739-28963794,28963876-28963958,28964049-28964118,
28964200-28964309,28964395-28964548,28965183-28965382,
28966175-28966348,28969080-28969277,28970564-28970791
Length = 1014
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 195 SPDCPRPASAAPEPPQWSPGTSH*QV 118
SP CP P S P Q++P S Q+
Sbjct: 665 SPGCPGPMSLGASPSQFTPPNSQMQI 690
>02_02_0662 - 12736904-12737214,12737632-12737914
Length = 197
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 195 SPDCPRPASAAPEPPQWSPGT 133
+P P PAS PEPP PG+
Sbjct: 10 APLLPSPASPLPEPPPAKPGS 30
>01_05_0713 - 24548701-24549930
Length = 409
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 345 VQFRVQLFPAGHRLLLLTAEHSTCGSGGGAA 253
VQ RV+ F A H LLL A + GGG A
Sbjct: 3 VQKRVRRFLALHSLLLYAAAPTALAGGGGGA 33
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -1
Query: 195 SPDCPRPA-SAAPEPPQWSPGTS 130
SP P P S+ P PP WSP T+
Sbjct: 105 SPPPPSPVKSSPPPPPAWSPVTN 127
>01_05_0598 +
23548081-23548186,23548277-23549508,23549621-23549652,
23549796-23550039
Length = 537
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +2
Query: 38 TSATEASRLELAGDSSTAI*IGQHRSVTCQWLVPGDHCGGSGAAEAGRGQSGED 199
T A+ A++ E GD T R+ T Q D GG G + AGR S D
Sbjct: 305 TDASAAAKAEEGGDGGTL------RNDTAQVNARLDGVGGGGGSAAGRNDSAGD 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,955,115
Number of Sequences: 37544
Number of extensions: 300282
Number of successful extensions: 1760
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1755
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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