Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15e14
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.33 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   5.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = +1

Query: 241 VAQRGRPATRPTGRVLRSQQQKPVPSREQLDAELDQYMASSKS----ALDLELEAYMREA 408
           + +  RP+ +      +SQ+  PV    +   +L+    SSKS     LDLE  A     
Sbjct: 343 ILRMSRPSDKEEREAQKSQKPSPVTGASKSHGDLELRQRSSKSLLANVLDLEDNALASHN 402

Query: 409 ELL 417
            LL
Sbjct: 403 NLL 405


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 309 RLLLLTAEHSTCGSGGGAAALRH 241
           +++LL A  + CG+ G + A RH
Sbjct: 4   KVVLLVALAAICGAQGASYAGRH 26


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 309 RLLLLTAEHSTCGSGGGAAALRH 241
           +++LL A  + CG+ G + A RH
Sbjct: 4   KVVLLVALAAICGAQGASYAGRH 26


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +1

Query: 247  QRGRPATRPTGRVLRSQQQKPVPSREQLDAELDQYMASSK 366
            Q+ +   +P  +  + QQQ+P P ++Q   +  Q     K
Sbjct: 1509 QQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQK 1548


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = -3

Query: 352 CIGPVPRPAVPCW 314
           C+ P  R ++ CW
Sbjct: 110 CVNPYDRDSLSCW 122


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 195  SPDCPRPASAAPEPPQW 145
            SP+   PA+ APE  Q+
Sbjct: 1804 SPEYDDPANCAPEEDQY 1820


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,718
Number of Sequences: 438
Number of extensions: 2123
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)