Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15e12
(213 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 107 1e-25
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 107 1e-25
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 43 6e-06
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 0.78
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 26 0.78
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 1.4
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo... 24 2.4
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom... 24 2.4
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb... 24 3.1
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 23 4.2
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 23 5.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 23 7.3
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 23 7.3
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||... 23 7.3
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch... 22 9.6
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 22 9.6
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 22 9.6
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 22 9.6
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 107 bits (258), Expect = 1e-25
Identities = 46/56 (82%), Positives = 53/56 (94%)
Frame = +3
Query: 6 VMPAVVIXQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 173
+MPA+V+ QRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 75 IMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 107 bits (258), Expect = 1e-25
Identities = 46/56 (82%), Positives = 53/56 (94%)
Frame = +3
Query: 6 VMPAVVIXQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 173
+MPA+V+ QRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 75 IMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 42.7 bits (96), Expect = 6e-06
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 15 AVVIXQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 152
A+++ + P RR DG ++ F+DNA V+VN + E G+ I VA E
Sbjct: 64 AIIVRTKSPVRRPDGRYVRFDDNACVLVNKECEPLGTRILSVVANE 109
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 0.78
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 124 EPFISPLLLTMTPALSSKYINTPS 53
+P+ P+L + P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 0.78
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 172 RGHRSAHSLATGPVMAEPFISPLLL-TMTPALSSKYINTPSRLLNGF 35
R H+ AH+ AEP ++P++ + P+++ +TPS L F
Sbjct: 60 RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESF 106
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.0 bits (52), Expect = 1.4
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -3
Query: 166 HRSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCXMTTA 14
+ + H GP++ ++ L P +S Y+N + L+GF+ + A
Sbjct: 963 YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013
>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 610
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 54 DGVFIYFEDNAGVIVNNKGEMKGSAI 131
DG + E N ++VN +M+G+A+
Sbjct: 216 DGALLLNERNVEILVNKLTQMRGAAL 241
>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -2
Query: 107 LVIDYDTRIVLKVYKYSITPSERFPLXDDHCRHY 6
L+ DY + V+K + ++ P + HCR Y
Sbjct: 17 LLKDYTHELTQTVHKNAKLSLQKCPACNKHCRQY 50
>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 214
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +3
Query: 12 PAVVIXQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAI 131
P+ I +KP D V + +D+ + N+K ++ A+
Sbjct: 171 PSYSINYKKPVPAGDWVIVRVKDDVARLYNSKSQLLAEAL 210
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 63 FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLW 167
F Y D I + KG+ + +TG +A +D W
Sbjct: 74 FTYDGDKIPSIPSLKGQPISNVLTGIIADSSSDQW 108
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 23.0 bits (47), Expect = 5.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 193 ELAFEAIRGHRSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNG 38
ELA + I + ++ TG M +P + L+ LSS Y P+R + G
Sbjct: 535 ELAKKVILANMPPVNVGTG--MYDPDTTEQLMLNISTLSSIYHKPPNRFVKG 584
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 163 RSAHSLATGPVMAEPFISPLLLTMT 89
++A+ A P+ A+PF SPL + T
Sbjct: 1022 QNAYFTAPQPMAADPFQSPLYVQPT 1046
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 157 AHSLATGPVMAEPFISPLLLTMTPALSSKYI 65
A S+ P+ EPF++ +L ++KYI
Sbjct: 743 AGSMRRSPIGFEPFVTEILSAGNKKEAAKYI 773
>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 186
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 128 GRALHFALVIDYDTRIVLKVYKYSIT 51
G H+A+ ID+ I ++ KYS+T
Sbjct: 54 GANAHYAVQIDFFKDIDVEKSKYSVT 79
>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 372
Score = 22.2 bits (45), Expect = 9.6
Identities = 6/10 (60%), Positives = 9/10 (90%)
Frame = -2
Query: 35 PLXDDHCRHY 6
PL DDHC+++
Sbjct: 134 PLSDDHCQYF 143
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 110 ALVIDYDTRIVLKVYKYSITP 48
+L+ D R +L++Y Y +TP
Sbjct: 861 SLIEDDTVRNILQLYYYKVTP 881
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 22.2 bits (45), Expect = 9.6
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -3
Query: 181 EAIRGHRSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSR 50
E + R++HS P M+ SP LT + + ++ +T R
Sbjct: 79 EKLMSTRTSHSPYISPTMSYTNHSPANLTRNSSFNHQHYSTTLR 122
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 39 PFRRRDGVFIYFEDNA 86
PF RD +FI E NA
Sbjct: 360 PFYERDAIFIVDEGNA 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 819,321
Number of Sequences: 5004
Number of extensions: 12873
Number of successful extensions: 39
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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