Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15e12
(213 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 109 4e-25
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 109 4e-25
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 109 4e-25
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 45 7e-06
03_05_0291 - 22837412-22838128 29 0.39
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 28 0.89
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19... 27 2.1
02_02_0500 - 10993675-10994067,10994434-10995738 26 4.8
01_06_0425 + 29264714-29266135 25 8.3
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 109 bits (261), Expect = 4e-25
Identities = 46/56 (82%), Positives = 53/56 (94%)
Frame = +3
Query: 6 VMPAVVIXQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 173
VMPAV++ QRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 76 VMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 109 bits (261), Expect = 4e-25
Identities = 46/56 (82%), Positives = 53/56 (94%)
Frame = +3
Query: 6 VMPAVVIXQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 173
VMPAV++ QRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 76 VMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 109 bits (261), Expect = 4e-25
Identities = 46/56 (82%), Positives = 53/56 (94%)
Frame = +3
Query: 6 VMPAVVIXQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 173
VMPAV++ QRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 93 VMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 148
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 45.2 bits (102), Expect = 7e-06
Identities = 23/49 (46%), Positives = 30/49 (61%)
Frame = +3
Query: 6 VMPAVVIXQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 152
V+ VV+ R DG I F+DNA V+VNNKGE+ G+ + GPV E
Sbjct: 105 VVYGVVVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHE 153
>03_05_0291 - 22837412-22838128
Length = 238
Score = 29.5 bits (63), Expect = 0.39
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -3
Query: 187 AFEAIRGHRSAHSLATGPVMAEPFI--SPLLLTMTPALSS 74
+++A+ GH+++H T P MA + P T +PA SS
Sbjct: 100 SYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASS 139
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 28.3 bits (60), Expect = 0.89
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +3
Query: 75 EDNAGVIV--NNKGEMKGSAITGPVAKECAD 161
ED +I+ N+KG +GS ITG + + CA+
Sbjct: 715 EDGDKIIMSSNDKGSNQGSFITGKIVESCAE 745
>05_01_0029 +
187769-188707,188971-189246,189978-190174,190263-190404,
190584-190862,190941-191013,191331-191379,192169-192433,
192576-192631,192777-192845,193028-193139,193682-193771,
193955-194125,194449-194506,194970-195128,195379-195401
Length = 985
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 36 KPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKEC-ADLWP 170
KP D V + DN GV+V+ G GS+ +C A+++P
Sbjct: 214 KPLSGGDEVMLLV-DNVGVVVDRSGHPVGSSFVFNTTPDCIAEVYP 258
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 136 PVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCXMTTAG 11
P EP I+ + ++PA+ +T S + NG+ M+T G
Sbjct: 225 PAPVEPIIANGKVKLSPAVMEMIYSTISGIENGYLPVMSTEG 266
>01_06_0425 + 29264714-29266135
Length = 473
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 184 FEAIRGHRSAHSLATGP 134
F A+ GH +AH LAT P
Sbjct: 11 FAAVLGHDAAHHLATTP 27
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,481,674
Number of Sequences: 37544
Number of extensions: 86898
Number of successful extensions: 221
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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