Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15e12
         (213 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   108   5e-25
Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical pr...    28   1.0  
AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical ...    27   2.4  
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z78012-6|CAB01416.1|  480|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AY557405-1|AAS64750.1|  480|Caenorhabditis elegans cyclin L prot...    25   7.3  
AF068708-8|AAC17761.1|  327|Caenorhabditis elegans Hypothetical ...    25   7.3  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  108 bits (260), Expect = 5e-25
 Identities = 49/56 (87%), Positives = 51/56 (91%)
 Frame = +3

Query: 6   VMPAVVIXQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 173
           V+  VVI QRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 76  VLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131


>Z82051-6|CAB04821.1|  354|Caenorhabditis elegans Hypothetical
           protein T23D5.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 98  DYDTRIVLKVYKYSITPSERFPL 30
           DY +  V K+Y YSIT   RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184


>AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical
           protein Y19D10B.5 protein.
          Length = 575

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 94  MTPALSSKYINTPSRLLNGFRCXMTT 17
           +TP ++ KY + PS + NG  C  T+
Sbjct: 391 LTPEINGKYCDLPSSVSNGTVCNSTS 416


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 212 NVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVI 99
           ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 86  SIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


>Z78012-6|CAB01416.1|  480|Caenorhabditis elegans Hypothetical
           protein C52E4.6a protein.
          Length = 480

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 88  PALSSKYINTPSRLLNGFRCXMTTAG 11
           PA+   YINT   ++N  R  + T G
Sbjct: 203 PAVDMNYINTKQHMINSERRILATLG 228


>AY557405-1|AAS64750.1|  480|Caenorhabditis elegans cyclin L
           protein.
          Length = 480

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 88  PALSSKYINTPSRLLNGFRCXMTTAG 11
           PA+   YINT   ++N  R  + T G
Sbjct: 203 PAVDMNYINTKQHMINSERRILATLG 228


>AF068708-8|AAC17761.1|  327|Caenorhabditis elegans Hypothetical
           protein C18G1.9 protein.
          Length = 327

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 181 EAIRGHRSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNG 38
           EAI+  R        P  +  FIS L+  M+ A++S Y++   RL  G
Sbjct: 165 EAIQVQRPEMHEIDYPCYSGDFISNLVTAMSMAVNSPYLSKLDRLAIG 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,537,820
Number of Sequences: 27780
Number of extensions: 71858
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)