Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15e12
         (213 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   2.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   2.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     20   2.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   3.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    20   3.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    19   6.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   8.9  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.6 bits (41), Expect = 2.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 79  SSKYINTPSRLLNGFRCXMTTAGI 8
           + KY N P  L   F     TAG+
Sbjct: 215 NDKYSNVPYFLFGDFNFRTDTAGV 238


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = -2

Query: 167 PQISTFFGYRPCD--GRAL 117
           P +  +FGY P D  GR+L
Sbjct: 325 PDVVQYFGYLPQDMVGRSL 343


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
 Frame = -2

Query: 167 PQISTFFGYRPCD--GRAL 117
           P +  +FGY P D  GR+L
Sbjct: 31  PDVVQYFGYLPQDMVGRSL 49


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 108 GEMKGSAITGPVAKECADLW 167
           GE+  S+  GP  K+C   W
Sbjct: 415 GEL-ASSFVGPKVKDCLISW 433


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 145 PKNVLICGRVLPQ 183
           P N  IC R LPQ
Sbjct: 25  PNNWRICDRSLPQ 37


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 121  PFISPLLLTMTPALSSKYINTPSRLLNGFRCXMTTAGITY 2
            PF   LLL +TP     Y  + S  ++  +  +T A + Y
Sbjct: 882  PFAPLLLLHLTPLQPRFYSISSSPDVHQGQIHLTVAVVQY 921


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 35  PLXDDHCRHY 6
           PL +DH  HY
Sbjct: 199 PLKEDHDDHY 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,590
Number of Sequences: 438
Number of extensions: 869
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)