Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15e11
(514 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187... 31 0.54
04_02_0012 + 8537124-8537464,8537558-8537693,8538811-8538861,854... 30 1.3
10_08_0649 + 19589807-19591024 29 2.2
03_05_0536 - 25357355-25357411,25357463-25357588,25357764-253578... 29 2.9
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744... 29 2.9
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672... 28 5.1
05_03_0340 + 12691974-12692155,12692248-12692312,12692816-126928... 27 8.8
02_05_0562 - 29970207-29970224,29970290-29970364,29971083-299714... 27 8.8
02_01_0616 + 4616936-4617307,4618723-4618809,4619322-4619384,461... 27 8.8
>04_01_0168 -
1874297-1874645,1874968-1875137,1875688-1875807,
1876750-1876812
Length = 233
Score = 31.1 bits (67), Expect = 0.54
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 374 P*TRVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCIT 237
P T + T A S S + C DSPT +T++G T + S T
Sbjct: 4 PTTSYSTTSAMERSNSTKRCSDSPTVSTSSGRVTTTAWSSTSGAAT 49
>04_02_0012 +
8537124-8537464,8537558-8537693,8538811-8538861,
8540190-8540413,8540491-8540715,8541520-8541619,
8541703-8541763,8543029-8543100,8543183-8543406
Length = 477
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = -3
Query: 404 WCPIKCTGPEP*TRVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNS 228
W P +C G P + ASG+ + + P FN A SF S + NS
Sbjct: 141 WLPCQCDGCTP----PASAASGSQVGTEYLITRPLFNPARASFYIPSMSSTSQAVPCNS 195
>10_08_0649 + 19589807-19591024
Length = 405
Score = 29.1 bits (62), Expect = 2.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 366 CSGFGASTLNWTPSPW 413
C+G+GA+ +W P PW
Sbjct: 31 CAGWGAAAASWRPRPW 46
>03_05_0536 -
25357355-25357411,25357463-25357588,25357764-25357892,
25358015-25358164,25358253-25358373,25360946-25361247
Length = 294
Score = 28.7 bits (61), Expect = 2.9
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Frame = +1
Query: 94 EFFYGVTLSSSHQSETWDPEAKA-EYPRSNKLVIRQA------LLGPDA-KPDELNVIQV 249
E F SSH +D EA+A + RS+ ++ +A +L A + D L Q
Sbjct: 136 ELFERANGESSHVLRIFDDEAQAMQSARSSSRMLDEAYETGVAILHKYADQRDRLKSAQR 195
Query: 250 EAMSLQEAVKLPVAVLKVGESRHVRLDIEFPDAPVTFTLVQGSG 381
+A+ + V L +VLK+ E RH R+D A + T+V+ G
Sbjct: 196 KALDILNTVGLSNSVLKLIERRH-RVDKWIAYAGMMITVVRYKG 238
>01_06_0866 - 32572002-32572541,32572806-32572984,32574330-32574430,
32574554-32574887,32574915-32575037,32575193-32575394,
32575915-32576097,32576332-32576436,32576553-32576760,
32577025-32577170,32577321-32577443,32577490-32577698,
32577931-32578152,32578189-32578198,32578710-32578763,
32580841-32581052,32581620-32581772,32582071-32582158,
32582192-32582290,32582660-32582907,32584806-32585049
Length = 1260
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -3
Query: 362 VNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASG 210
V + G G + R SP F G+ +C D A+ + + SG+A G
Sbjct: 1140 VRLAGYEGIDLGRPAATVSPEFRVTLGTANGACVDRAAVTVLY--SGVALG 1188
>02_02_0096 -
6727844-6727957,6728149-6728247,6728332-6728410,
6728534-6728634,6728740-6728808,6729180-6729220,
6729992-6730836,6730924-6731027,6731479-6732354
Length = 775
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Frame = +1
Query: 187 VIRQALLGPDAKPDELNV---IQVEAMSLQE-AVKLPVAVLKVGESRH 318
++ A+ GP DE+N ++ A+ LQ ++ LP+ +L++G SRH
Sbjct: 239 LVVDAMGGPVDDADEMNREWGVKSRALCLQRNSIVLPLGLLRIGLSRH 286
>05_03_0340 +
12691974-12692155,12692248-12692312,12692816-12692861,
12692959-12693057,12693722-12693755,12694489-12694618,
12694795-12694855,12695495-12695591,12696843-12697022,
12697120-12697233,12697283-12697396
Length = 373
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 336 IPRCACYIYSCSGFGAS-TLNWTPSP 410
+P + + +SCSGF AS W P+P
Sbjct: 10 LPFSSLFFFSCSGFEASGGAGWPPAP 35
>02_05_0562 -
29970207-29970224,29970290-29970364,29971083-29971441,
29971572-29971713,29971906-29972025,29972139-29972216,
29972330-29972429,29972522-29972571,29972827-29972904,
29973624-29973751,29973776-29973977,29974045-29974144,
29974236-29974551,29974645-29974690,29975526-29975622,
29977254-29977258,29977643-29977708,29978631-29978690,
29979167-29979272,29979513-29979658,29980731-29980813,
29980951-29981056,29996243-29996266,29996378-29996438,
29996467-29996750,29996914-29997096
Length = 1010
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = -2
Query: 90 RHDDFTNLLRFLATR----SRATPLHSNLRNWR 4
RHDD+ +LRFL R +A + +++ +WR
Sbjct: 519 RHDDYHTMLRFLKARKFDVEKAAHMWADMLHWR 551
>02_01_0616 +
4616936-4617307,4618723-4618809,4619322-4619384,
4619478-4619537,4619570-4619602,4621584-4621751
Length = 260
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 366 CSGFGASTLNWTPSPWCSA 422
CS GA WTP WCS+
Sbjct: 16 CSLRGADLAGWTPPWWCSS 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,490,006
Number of Sequences: 37544
Number of extensions: 234544
Number of successful extensions: 610
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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