Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15e11
         (514 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.46 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.46 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   3.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   3.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   5.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.9  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 308 SPTFNTATGSFTASC-SDMASTCITFNSSGLASGPNN 201
           SP+   + GSFTA C S++ ST  +  +  +A  P N
Sbjct: 64  SPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPN 100


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 308 SPTFNTATGSFTASC-SDMASTCITFNSSGLASGPNN 201
           SP+   + GSFTA C S++ ST  +  +  +A  P N
Sbjct: 64  SPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPN 100


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
 Frame = +1

Query: 82  IMTDEFFYGVTLSSSHQSETWDPEAKAEYPRSNKLV-----IRQALLGPDAKPDELN--- 237
           + TD      ++SSS +++ W P+   E    N L+      +   +G   K D +N   
Sbjct: 367 LRTDISSSSSSISSSEENDFWQPKPTLEDAPQNSLLPNFVGYKGKHIGKSGKVDVINAAK 426

Query: 238 --VIQVEAMSLQEAVKLPV 288
             + Q+ A  L++A  +PV
Sbjct: 427 ELIFQI-ANELEDASNIPV 444


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 85  MTDEFFYGVTLSSSHQSETW 144
           M+DE  YG+ + S  Q+ +W
Sbjct: 209 MSDELGYGLIVYSWEQNRSW 228


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 78  NHHDGRVFLWCHPFIITS 131
           +H+DGR+  W  P ++ S
Sbjct: 274 DHNDGRLRYWRTPSVVVS 291


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 186 RHSSSIVRSRCQTR*IKCDTGG 251
           +H SS   + C    ++C TGG
Sbjct: 282 QHRSSSASTTCSGHTVRCFTGG 303


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 356 VTGASGNSMSRRTCLDSPTFNTATG--SFTASCSDM 255
           VTG  GN  +    + +P   TAT    F+ + SD+
Sbjct: 52  VTGIFGNITTCTVIIKNPAMQTATNYYLFSLAISDL 87


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 359 NVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTC 243
           NV  A   +  + TC  SP+  + T +  +S  D +  C
Sbjct: 317 NVMSAKYRNAFKETCRCSPSNPSITRTGLSSVRDSSIIC 355


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 233 NSSGLASGPNNA*RMTSLLLRGYSAFASGS 144
           N  G  + PN+A R     + G  A  SGS
Sbjct: 576 NDEGGKTSPNSAVRKCMSPINGSGASGSGS 605


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = +2

Query: 101 SMVSPFHHHISQRHGIQRQKQNTHAATSSSF 193
           +M  P HHH  Q   +Q          S S+
Sbjct: 346 TMGPPHHHHHHQTQSLQHLHYRQPPTLSESY 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,454
Number of Sequences: 438
Number of extensions: 2427
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)