Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15e06
         (470 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    27   0.066
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    21   7.6  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 0.066
 Identities = 18/79 (22%), Positives = 33/79 (41%)
 Frame = -1

Query: 311 MNSSRKNIEKMFFTLCMLSVLLA*FSKLLFMETIHLLNSVKKVRPLPSTIKLWLKYFENK 132
           +N  ++  E+  FT   L +L   F+K  + +         K+    S +++W K    K
Sbjct: 122 VNPRKQRRERTTFTRAQLDLLEGLFAKTRYPDIFMREEVAVKINLPESRVQVWFKNRRAK 181

Query: 131 KHNESISSRNNCASKHTFS 75
              +    +N  AS+ T S
Sbjct: 182 CRQQLQQQQNKSASRTTTS 200


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 400 CQSCKPANKIQCF 438
           C SC P    QCF
Sbjct: 45  CVSCGPGQSGQCF 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,705
Number of Sequences: 336
Number of extensions: 2664
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10931752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)