Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15e06
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235...    31   0.35 
07_01_1162 - 11002193-11002274,11002628-11002662,11004285-110044...    31   0.47 
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047     28   3.3  
03_06_0118 + 31795050-31796404,31796513-31797083                       27   5.8  
03_01_0309 - 2432395-2433271,2433494-2434495,2434538-2435073,243...    27   5.8  
02_05_0409 - 28723534-28724646                                         27   5.8  
12_02_0672 - 21726416-21726664,21727654-21727744,21727914-217279...    27   7.6  
01_01_0280 + 2295043-2295154,2295258-2295475,2295558-2296970           27   7.6  

>08_02_0499 -
           17820615-17822516,17823224-17823373,17823491-17823568,
           17823948-17824061,17824145-17824297,17826928-17827071,
           17827162-17827516,17828574-17828741,17829522-17829751,
           17829916-17830049,17830686-17830749
          Length = 1163

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 265 HNVKNIFSIFLRDEFIKQVP---QFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPANKI 429
           HN+     +F+  E IKQ P     +  MQ++ T+  PT  P +D ++  +  P + I
Sbjct: 457 HNISEAKEVFV--EGIKQAPCKALIKGFMQFMSTHGGPTEIPILDSVISNAVVPGSDI 512


>07_01_1162 -
           11002193-11002274,11002628-11002662,11004285-11004419,
           11004521-11005048
          Length = 259

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 16/65 (24%), Positives = 34/65 (52%)
 Frame = +1

Query: 157 SLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTDNIHNVKNIFSIFLRDEFIKQVPQFRT 336
           +L+ DG  L    +F KC+  +++ +    +  D +  +KN  S+F +D F  ++  + T
Sbjct: 194 ALVSDGPNLDAVVDFLKCVPCLETLYIT--SRPDKV--IKNARSVFAKDIFYLKIRYYAT 249

Query: 337 IMQYL 351
           +  Y+
Sbjct: 250 MSDYV 254


>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
          Length = 396

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 356 HITIRRRHPTWTRSCVSRASPQT 424
           +I  RRRH T+T SC  R SP +
Sbjct: 21  YIPPRRRHGTFTSSCAFRLSPSS 43


>03_06_0118 + 31795050-31796404,31796513-31797083
          Length = 641

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 166 VDGKGLTFFTEFNKCIVSIKSSFENQANNTDNIHNVKNIFSIFL 297
           + G G+ FF   N    ++ S +    N+T+N +   +IF + L
Sbjct: 105 LSGHGIVFFVGKNNFTAALPSQYLGLLNSTNNGNTTNHIFGVEL 148


>03_01_0309 -
           2432395-2433271,2433494-2434495,2434538-2435073,
           2435579-2435716,2436050-2436148,2436278-2436346,
           2436968-2437063
          Length = 938

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 71  ASKTCVLKRNCYEMKSIRCVFYFQNISTKA*SWTVKVLLF 190
           A K+  +   C E+ +  C+  F  + +KA SW V+ LL+
Sbjct: 27  AIKSSEVALKCSELDTTNCLGPFLTLGSKAGSWCVRHLLW 66


>02_05_0409 - 28723534-28724646
          Length = 370

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 393 LVHVGCRRRIVICLQVLHNGPKLGHLFDELVAQK 292
           LV  G R  +V+ +     GPKLGH+F+ LV+ K
Sbjct: 240 LVAAGDRLLLVLFMM----GPKLGHMFETLVSVK 269


>12_02_0672 -
           21726416-21726664,21727654-21727744,21727914-21727981,
           21728684-21728809,21728893-21729113,21729876-21729903
          Length = 260

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/69 (24%), Positives = 37/69 (53%)
 Frame = -1

Query: 284 KMFFTLCMLSVLLA*FSKLLFMETIHLLNSVKKVRPLPSTIKLWLKYFENKKHNESISSR 105
           K F T    +++L   SK +FM++  ++++   +RP PS   + ++ + +++   +  S 
Sbjct: 140 KNFITAFFRNLMLVTTSKTIFMDSSDIISANSLLRP-PS---MRVRDYRSEQQQGAARST 195

Query: 104 NNCASKHTF 78
           + CA   TF
Sbjct: 196 SCCAMNRTF 204


>01_01_0280 + 2295043-2295154,2295258-2295475,2295558-2296970
          Length = 580

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 368 RRRHPTWTRSCVSRASPQTKFNVSSANADTWR 463
           R+   T   +C+ RA+ +T  + S+ANA  WR
Sbjct: 285 RKLEHTGQFACLDRAAVETPEDRSAANASAWR 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,088,960
Number of Sequences: 37544
Number of extensions: 231070
Number of successful extensions: 660
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)