Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15e05
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 114 6e-27
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 66 2e-12
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 53 2e-08
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 45 6e-06
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 40 2e-04
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 39 5e-04
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 38 9e-04
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 37 0.002
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 37 0.002
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 36 0.005
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 34 0.011
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 33 0.019
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 27 2.2
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 2.9
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 3.8
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 25 5.0
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 5.0
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 6.7
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 25 8.8
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 8.8
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 114 bits (275), Expect = 6e-27
Identities = 56/89 (62%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Frame = +3
Query: 249 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 425
F DF+ GG+SAAVSKTA APIERVKLL+Q Q + + RYKGI + F R E+G
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEG 86
Query: 426 LLSFWRGNFANVIRYFPTQALNFAFKDKY 512
++S WRGN ANV+RYFPTQALNFAFKDK+
Sbjct: 87 VISLWRGNTANVLRYFPTQALNFAFKDKF 115
Score = 34.3 bits (75), Expect = 0.011
Identities = 20/86 (23%), Positives = 39/86 (45%)
Frame = +3
Query: 249 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 428
FA + +GG + A S V ++ + L S + ++++ G+VD + + + GL
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGL 191
Query: 429 LSFWRGNFANVIRYFPTQALNFAFKD 506
+RG +V+ + L F D
Sbjct: 192 RGLYRGFGPSVVGIVVYRGLYFGMYD 217
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 66.5 bits (155), Expect = 2e-12
Identities = 32/78 (41%), Positives = 51/78 (65%)
Frame = +3
Query: 264 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 443
L+GG++A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+R
Sbjct: 25 LSGGVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFR 77
Query: 444 GNFANVIRYFPTQALNFA 497
GN N +R FP A+ FA
Sbjct: 78 GNGTNCLRAFPYGAVQFA 95
Score = 43.6 bits (98), Expect = 2e-05
Identities = 26/92 (28%), Positives = 44/92 (47%)
Frame = +3
Query: 219 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDA 398
K + AD AF K FL GG + + +T P + ++ QV + YK I A
Sbjct: 217 KFFSNADLTAFQKLFL-GGFTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSA 272
Query: 399 FVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 494
I K +G+ F+RG +N+++ P ++ +
Sbjct: 273 IFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 53.2 bits (122), Expect = 2e-08
Identities = 29/80 (36%), Positives = 44/80 (55%)
Frame = +3
Query: 255 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 434
K +AGG + V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL
Sbjct: 19 KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHG 77
Query: 435 FWRGNFANVIRYFPTQALNF 494
++G+ A + R FP + F
Sbjct: 78 LYQGHTATLYRVFPYAGIKF 97
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 45.2 bits (102), Expect = 6e-06
Identities = 23/86 (26%), Positives = 45/86 (52%)
Frame = +3
Query: 237 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPK 416
DP F++GGI+ VS+T AP++R+K++L + + + + ++ +
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML-ISDTGSKPSPKYPFATLLHTTKVLWN 181
Query: 417 EQGLLSFWRGNFANVIRYFPTQALNF 494
G+ SF+ GN NV++ P ++ F
Sbjct: 182 RNGIRSFFVGNGINVLKVMPESSIKF 207
Score = 41.1 bits (92), Expect = 9e-05
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +3
Query: 270 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 449
G +S + T V P+ ++ LQ Q S A Y G +D F + K +G ++G
Sbjct: 342 GALSGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGL 398
Query: 450 FANVIRYFPTQALNF 494
N+++ P+ A+++
Sbjct: 399 SPNLLKVAPSVAISY 413
Score = 34.7 bits (76), Expect = 0.008
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 261 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSF 437
+LAGG++ +V++ + P++ +K +Q +S+ Q K I+ + + + K G+ +
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGY 287
Query: 438 WRGNFANVIRYFPTQA 485
+RG ++ FP A
Sbjct: 288 YRGVLVGILGMFPYSA 303
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 39.9 bits (89), Expect = 2e-04
Identities = 23/78 (29%), Positives = 43/78 (55%)
Frame = +3
Query: 264 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 443
++GG+S A++ + P++ VK LLQ + S I ++ KG +D I G+ SF++
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIPSFFK 267
Query: 444 GNFANVIRYFPTQALNFA 497
G ++ P A+++A
Sbjct: 268 GIRPRMVVAMPATAVSWA 285
Score = 37.9 bits (84), Expect = 9e-04
Identities = 20/79 (25%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +3
Query: 264 LAGGISAAVSKTAVAPIERVKLLLQVQH-VSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 440
LAG S + + + P++ +K +Q+ + VS+ ++ + IV++ ++I +G+ S W
Sbjct: 24 LAGAFSGILEHSVMYPVDAIKTRMQMLNGVSRSVSGN-----IVNSVIKISSTEGVYSLW 78
Query: 441 RGNFANVIRYFPTQALNFA 497
RG + ++ P+ A+ F+
Sbjct: 79 RGISSVIMGAGPSHAIYFS 97
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 38.7 bits (86), Expect = 5e-04
Identities = 26/92 (28%), Positives = 40/92 (43%)
Frame = +3
Query: 237 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPK 416
D + F F AG ++ + P++ VK +Q+ V K Y G D +I K
Sbjct: 4 DNIPFPVTFAAGAVAGISEVLTLYPLDVVKTRMQLS-VGKS-----DYNGTFDCLKKIVK 57
Query: 417 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKY 512
+G +RG ++ P +AL FA D Y
Sbjct: 58 NEGPHRLYRGILPPILMEAPKRALKFASNDTY 89
Score = 33.9 bits (74), Expect = 0.014
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 252 AKDFLAGGISAAVSKTAVAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGL 428
A L G + V P E +K+ LQ V++ SK Y G VD F +I K++ +
Sbjct: 105 ALSILTGSCAGFTETFVVVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERI 157
Query: 429 LSFWRGNFANVIRY 470
L+ + G A + R+
Sbjct: 158 LALYNGFEATMWRH 171
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 37.9 bits (84), Expect = 9e-04
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 246 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQ 422
+F KDFLA G+S V++ V P + VK+ LQ Q I Y +D +I K +
Sbjct: 16 SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQSNVSPI-----YNNALDCVKKISKNE 69
Query: 423 GLLSFWRG 446
GL +F++G
Sbjct: 70 GLAAFYKG 77
Score = 34.7 bits (76), Expect = 0.008
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 240 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKE 419
PV + +++G IS + V P+E V++ LQ+Q K + Y G D +I +
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQ 163
Query: 420 QGLLSFWRG 446
GL +G
Sbjct: 164 YGLSGIMKG 172
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 36.7 bits (81), Expect = 0.002
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +3
Query: 261 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 440
FL G ++ ++ PI+ VK +Q ++A + YK + +I + GLL FW
Sbjct: 207 FLVGSVAGIITVYCTQPIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFW 260
Query: 441 RGNFANVIRYFPTQALNFAFKDK 509
G + R + + F +K
Sbjct: 261 SGATPRLARLILSGGIVFTVYEK 283
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 261 FLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 437
FL+GG++A + T P E +K Q+Q ++K + + YK + AF I + +G+
Sbjct: 27 FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIARHEGIRGL 86
Query: 438 WRG 446
RG
Sbjct: 87 QRG 89
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 35.5 bits (78), Expect = 0.005
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Frame = +3
Query: 198 VKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVS----KQIA 365
V +T +N SN P + F+AGG++ + A AP++ VK LQ KQ A
Sbjct: 32 VLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQSDFYKDRFLKQTA 90
Query: 366 ADQ-----RYKGIVDAFV---RIPKEQGLLSFWRGNFANVIRYFPTQALNF 494
+ Y+ +D + + +G + +RG N+I P +++NF
Sbjct: 91 KSKSPLTAAYRHFMDTCIILKNVKVHEGTRALFRGLGPNLIGTIPARSINF 141
Score = 30.3 bits (65), Expect = 0.18
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +3
Query: 273 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 452
GI+ ++ P E V+ L+ S I +Y G++ F + EQG++ + G
Sbjct: 280 GIAKFMAAGIAYPHEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLT 336
Query: 453 ANVIRYFPTQALNF 494
A+++R P + F
Sbjct: 337 AHLLRVVPNACILF 350
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 34.3 bits (75), Expect = 0.011
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQR---YKGIVDAFVRIPKEQG 425
KD +AGG + S VAP++ VK Q Q + G + + I +G
Sbjct: 7 KDAIAGGAAGLASSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEG 66
Query: 426 LLSFWRGNFANVIRYFPTQALNFAFKDK 509
+ +RG ++ Y P+ ++ F +K
Sbjct: 67 IAGLYRGVGPMMLGYLPSWSIYFVVYEK 94
Score = 28.7 bits (61), Expect = 0.54
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 363 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 461
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 33.5 bits (73), Expect = 0.019
Identities = 20/77 (25%), Positives = 36/77 (46%)
Frame = +3
Query: 264 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 443
LAGGIS+ + + +AP + +K+ +Q+ S + F +++G+ + WR
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS-----------LRPVFKETVQKEGVRALWR 69
Query: 444 GNFANVIRYFPTQALNF 494
GN + Y A F
Sbjct: 70 GNVVAELLYLVYGAAEF 86
Score = 28.7 bits (61), Expect = 0.54
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +3
Query: 264 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 443
L+G I+ A SK + P++ V LQ YK D F+ I + G+ +R
Sbjct: 197 LSGVIAGAGSKAIMFPVDTVVKTLQT--------FPSNYKSFKDCFLSIYRNSGIKGLYR 248
Query: 444 GNFANVIRYFP 476
G ++++ P
Sbjct: 249 GLSVSMLKVAP 259
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 2.2
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = +3
Query: 255 KDFLAGGISAAVSKT--AVAPIERVKLLLQVQHVSK-QIAADQRYKGIVDAFVRIPKEQG 425
KD L GG + V K P + +QV K + A K + D + G
Sbjct: 167 KDHLVGGCADGVIKVWDLSTPNSAIISRMQVDRARKGEAALIWAVKSLRDGTIVSADSSG 226
Query: 426 LLSFWRGNFANVIRYF 473
+ FW G F + + F
Sbjct: 227 AVKFWNGKFFTLSQSF 242
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 98 YEITPNLLFKNQELVFRDPPSACAATPTSTY 190
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 403 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 296
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 5.0
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +3
Query: 264 LAGGISAAVSKTAVAPIERVKLLLQV--QHVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 437
+AG + +S T V+PIE + +Q H A + + + D + ++G+L+
Sbjct: 141 IAGASARTISATIVSPIELFRTRVQAVGGHYPPGHAREIANE-VFDGLKLMIHQKGILNL 199
Query: 438 WRGNFANVIRYFPTQA 485
W G + R P A
Sbjct: 200 WSGVSVTLWRDVPFSA 215
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 5.0
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 387 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 479
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 6.7
Identities = 19/84 (22%), Positives = 33/84 (39%)
Frame = +3
Query: 219 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDA 398
K L P + L G ++ + +A+ P++ +K QV Y G +
Sbjct: 13 KTLQLYTPQYYGLCTLGGLLACGTTHSAITPLDLIKCRKQVN--------PNIYPGNIAG 64
Query: 399 FVRIPKEQGLLSFWRGNFANVIRY 470
F I ++GL + G +I Y
Sbjct: 65 FKTILSKEGLRGLYTGGMPTLIGY 88
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 24.6 bits (51), Expect = 8.8
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 110 PNLLFKNQELVFRDPPSACAATPT 181
P + K E + RDPP A PT
Sbjct: 4 PKRIIKEIETLTRDPPPGIVAAPT 27
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 8.8
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 78 TLC--APVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLV 200
T+C AP + L ++C+K+ C + PR PR+ HL+
Sbjct: 551 TICNIAPFVENLSFVTCAKLMQLCSSLSSPRFLFRNPRN-HLL 592
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,106
Number of Sequences: 5004
Number of extensions: 40272
Number of successful extensions: 146
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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