Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15e04
         (572 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   3.2  
DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory pro...    21   7.5  
AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical pro...    21   7.5  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 315 FTALIVNIVGGAVLCMG 365
           + A++ +I+ GA+ C+G
Sbjct: 86  YPAIVADILSGAIACIG 102


>DQ855489-1|ABH88176.1|  122|Tribolium castaneum chemosensory
           protein 2 protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 442 EAAMLPAIIPDAL 404
           EAA+L  +IPDAL
Sbjct: 56  EAAILRDVIPDAL 68


>AJ973444-1|CAJ01491.1|  122|Tribolium castaneum hypothetical
           protein protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 442 EAAMLPAIIPDAL 404
           EAA+L  +IPDAL
Sbjct: 56  EAAILRDVIPDAL 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,669
Number of Sequences: 336
Number of extensions: 2335
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)