Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15e03
         (474 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC063668-1|AAH63668.1|  923|Homo sapiens USP11 protein protein.        29   8.2  
BC000350-1|AAH00350.4|  921|Homo sapiens USP11 protein protein.        29   8.2  
AY623010-1|AAV41518.1|   94|Homo sapiens differentially placenta...    29   8.2  
AY302185-1|AAP68818.1|   94|Homo sapiens replicative senescence ...    29   8.2  
AB073597-1|BAC20463.1|  921|Homo sapiens deubiquitinating enzyme...    29   8.2  

>BC063668-1|AAH63668.1|  923|Homo sapiens USP11 protein protein.
          Length = 923

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 277 HGLELNDPPKKPPICDVPKVILLETSTFNLLIVLEFTVKKCHRVRYN 137
           +GLE   PP +  + ++P +  +E     LL+V    + K H V+++
Sbjct: 130 YGLEHGQPPIERKVIELPNIQKVEVYPVELLLVRHNDLGKSHTVQFS 176


>BC000350-1|AAH00350.4|  921|Homo sapiens USP11 protein protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 277 HGLELNDPPKKPPICDVPKVILLETSTFNLLIVLEFTVKKCHRVRYN 137
           +GLE   PP +  + ++P +  +E     LL+V    + K H V+++
Sbjct: 128 YGLEHGQPPIERKVIELPNIQKVEVYPVELLLVRHNDLGKSHTVQFS 174


>AY623010-1|AAV41518.1|   94|Homo sapiens differentially placenta 1
           expressed protein protein.
          Length = 94

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 14  YFYSVVSAKFVIIEV*NTIIILYKLTIPINYSRISITG--RPLVISNTMTFLYC 169
           +FY+V++ +     V +  I+   +  PI +S ISITG    +++S T  F +C
Sbjct: 42  FFYTVLNTQ-TYFAVHDIFILFSWICFPILFSLISITGWISQIIMSETEIFCHC 94


>AY302185-1|AAP68818.1|   94|Homo sapiens replicative senescence
           upregulated protein protein.
          Length = 94

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 14  YFYSVVSAKFVIIEV*NTIIILYKLTIPINYSRISITG--RPLVISNTMTFLYC 169
           +FY+V++ +     V +  I+   +  PI +S ISITG    +++S T  F +C
Sbjct: 42  FFYTVLNTQ-TYFAVHDIFILFSWICFPILFSLISITGWISQIIMSETEIFCHC 94


>AB073597-1|BAC20463.1|  921|Homo sapiens deubiquitinating enzyme
           protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 277 HGLELNDPPKKPPICDVPKVILLETSTFNLLIVLEFTVKKCHRVRYN 137
           +GLE   PP +  + ++P +  +E     LL+V    + K H V+++
Sbjct: 128 YGLEHGQPPIERKVIELPNIQKVEVYPVELLLVRHNDLGKSHTVQFS 174


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,266,396
Number of Sequences: 237096
Number of extensions: 1155261
Number of successful extensions: 2068
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2068
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)