Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15e03
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            25   0.41 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   6.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.9  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 25.0 bits (52), Expect = 0.41
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 170 EFKHN*QIESTSFQ*NNFRYITDWGFFW 253
           EFK++ +I +     NN +++ +WG  W
Sbjct: 266 EFKYSYEISNAFRGNNNLKWLVNWGEQW 293


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 261 MILQKNPQSVMYLKL 217
           M LQKNPQ +  +KL
Sbjct: 275 MELQKNPQKLENIKL 289


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 382 QYVLLNVDKNQNLLIN 429
           +Y+L   D+NQN+L N
Sbjct: 374 EYLLALSDRNQNVLNN 389


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 61  KYNHNTVQAYNSN 99
           KYN+N    YN+N
Sbjct: 97  KYNYNNKYNYNNN 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,220
Number of Sequences: 438
Number of extensions: 2912
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)