Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15e01
         (204 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4UE53 Cluster: ABC1-related protein, putative; n=2; Th...    31   3.7  
UniRef50_A7S754 Cluster: Predicted protein; n=2; Nematostella ve...    31   6.5  

>UniRef50_Q4UE53 Cluster: ABC1-related protein, putative; n=2;
           Theileria|Rep: ABC1-related protein, putative -
           Theileria annulata
          Length = 1265

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 48  LHLTLSYNLLVNFFNPPPSRLSLIFKILKEHFQTILYIFINSHLLNIVYK 197
           LH+ +    L N+F+  P+ L L FK+L E+      +   +  L+++YK
Sbjct: 403 LHMLIK-EFLTNYFDKAPNFLPLTFKVLSEYHSLSRTVATFAPFLHLIYK 451


>UniRef50_A7S754 Cluster: Predicted protein; n=2; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 114

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +3

Query: 27  PSASACFLHLTLSYNLLVNFFNPPPSRLSLIFKILKEHFQTILYIFINSHLLNIVY 194
           P  +    H+T  + + + F    P  ++L+F +   H  T+L+   + H++ +++
Sbjct: 14  PHVTTLLFHVTHPHEMTLLFHVTHPHVMTLLFHVTHPHVMTLLFHVTHPHVMTLLF 69


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,854,856
Number of Sequences: 1657284
Number of extensions: 2568198
Number of successful extensions: 6678
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6677
length of database: 575,637,011
effective HSP length: 47
effective length of database: 497,744,663
effective search space used: 9954893260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)