Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15d23
(489 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 193 2e-49
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 193 2e-49
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 193 2e-49
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 193 2e-49
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 191 1e-48
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 178 7e-45
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 33 0.40
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 33 0.40
Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7) prot... 30 3.7
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot... 30 3.7
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein. 30 3.7
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 193 bits (471), Expect = 2e-49
Identities = 96/163 (58%), Positives = 113/163 (69%)
Frame = +1
Query: 1 INXKHXRKVRRTEXKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
I RKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+S
Sbjct: 5 IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLS 64
Query: 181 RLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFD 360
R+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFD
Sbjct: 65 RMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFD 124
Query: 361 QLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYV 489
QLAL +P G TVL+ G R RE RHFG APG P SHTKPYV
Sbjct: 125 QLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYV 167
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 193 bits (471), Expect = 2e-49
Identities = 96/163 (58%), Positives = 113/163 (69%)
Frame = +1
Query: 1 INXKHXRKVRRTEXKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
I RKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+S
Sbjct: 5 IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLS 64
Query: 181 RLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFD 360
R+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFD
Sbjct: 65 RMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFD 124
Query: 361 QLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYV 489
QLAL +P G TVL+ G R RE RHFG APG P SHTKPYV
Sbjct: 125 QLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYV 167
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 193 bits (471), Expect = 2e-49
Identities = 96/163 (58%), Positives = 113/163 (69%)
Frame = +1
Query: 1 INXKHXRKVRRTEXKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
I RKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+S
Sbjct: 5 IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLS 64
Query: 181 RLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFD 360
R+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFD
Sbjct: 65 RMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFD 124
Query: 361 QLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYV 489
QLAL +P G TVL+ G R RE RHFG APG P SHTKPYV
Sbjct: 125 QLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYV 167
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 193 bits (471), Expect = 2e-49
Identities = 96/163 (58%), Positives = 113/163 (69%)
Frame = +1
Query: 1 INXKHXRKVRRTEXKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
I RKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S+S
Sbjct: 5 IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLS 64
Query: 181 RLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFD 360
R+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFD
Sbjct: 65 RMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFD 124
Query: 361 QLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYV 489
QLAL +P G TVL+ G R RE RHFG APG P SHTKPYV
Sbjct: 125 QLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYV 167
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 191 bits (466), Expect = 1e-48
Identities = 95/163 (58%), Positives = 112/163 (68%)
Frame = +1
Query: 1 INXKHXRKVRRTEXKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVS 180
I RKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+ +S
Sbjct: 5 IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLCLS 64
Query: 181 RLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFD 360
R+ R MK P RE AVVVGT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFD
Sbjct: 65 RMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFD 124
Query: 361 QLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYV 489
QLAL +P G TVL+ G R RE RHFG APG P SHTKPYV
Sbjct: 125 QLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYV 167
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 178 bits (434), Expect = 7e-45
Identities = 84/129 (65%), Positives = 101/129 (78%)
Frame = +1
Query: 103 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 282
TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T+DVR+ ++PK+
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKL 75
Query: 283 TVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGA 462
V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R RE RHFG APG
Sbjct: 76 KVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGT 135
Query: 463 PRSHTKPYV 489
P SHTKPYV
Sbjct: 136 PHSHTKPYV 144
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 33.5 bits (73), Expect = 0.40
Identities = 23/67 (34%), Positives = 27/67 (40%)
Frame = +3
Query: 225 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTG 404
CR SG S R CS +S T CW + F +SCS W S+G
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSF----TSCSCW---SSG 82
Query: 405 TRSAKCS 425
T S CS
Sbjct: 83 TSSTPCS 89
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 33.5 bits (73), Expect = 0.40
Identities = 23/67 (34%), Positives = 27/67 (40%)
Frame = +3
Query: 225 CRGSGDSHK*RETVQDTEDDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTG 404
CR SG S R CS +S T CW + F +SCS W S+G
Sbjct: 30 CRSSGTSSTSRSWWSSGTSSTSCSWWSSGTSSTFCSCWSSGTSF----TSCSCW---SSG 82
Query: 405 TRSAKCS 425
T S CS
Sbjct: 83 TSSTPCS 89
>Z49155-1|CAA89025.1| 180|Homo sapiens cL83D3.1 (exons 3-7)
protein.
Length = 180
Score = 30.3 bits (65), Expect = 3.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 315 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 193
+F N+KSS +R + C H Q SWLL+V
Sbjct: 138 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 178
>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
protein.
Length = 3144
Score = 30.3 bits (65), Expect = 3.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 315 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 193
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
Length = 3144
Score = 30.3 bits (65), Expect = 3.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 315 SFFGNMKSSHRHLRYLVQSHVICDCPHYHGNQTLTSWLLHV 193
+F N+KSS +R + C H Q SWLL+V
Sbjct: 256 AFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNV 296
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,596,532
Number of Sequences: 237096
Number of extensions: 1762293
Number of successful extensions: 4177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4177
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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