Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15d22
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 1.4
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 1.4
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 27 2.4
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.2
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 25 5.6
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa... 25 5.6
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.3
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 7.3
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 25 9.7
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce... 25 9.7
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 25 9.7
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 479 DVIAKIDDLTQKLTVANAD 535
D +KID LT+KL VANA+
Sbjct: 618 DSASKIDSLTEKLKVANAE 636
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +2
Query: 332 LITKSGVIQLIMKSKLPYAIELQEWLL 412
L+ K GV+ L+ K KLP+++ ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = +2
Query: 224 DGKYKSTFEHADQIQHHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKL 379
D YK +H I + V K G P L PH G+I+ I KL
Sbjct: 4 DSDYKRAEKHLSSIDNKWSSLVKKVG-PCTLTPHPEHAPYEGIIRAITSQKL 54
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 195 IVNGQYVSTSTASTNRRLSMPTKSSTMLQIAWQSRAT 305
I G Y STS +ST+ + P+ SST + S +T
Sbjct: 129 ISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSST 165
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +2
Query: 137 DEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQHHAPDSVAKQGDPLY 313
+EQ VRFV++ + L Y++ + I H D K + D + + ++K D +Y
Sbjct: 928 EEQLVRFVSRQVLYGLSYLHSKGII--HRDLKADNLLIDFDGVCKISDFGISKHSDNVY 984
>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 669
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 134 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 259
GDE V+ D S V+ + ++ GKY+ TF H D
Sbjct: 48 GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 215 HVLPVHNLHILNCW 174
HVLP+ L +LNC+
Sbjct: 405 HVLPIRQLFLLNCY 418
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 257 RHAQTSICTCRRRGHVLPVHNLHILN 180
R A T + R +LPVH LH+ +
Sbjct: 776 RQAMTRLKGLRETNSILPVHQLHMFH 801
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -1
Query: 285 LSGAWCWIWSACSNVDLYLPSTWTRIARSQFTYFKLLAMSL 163
L G WC S + +WT+ AR + F L+ L
Sbjct: 154 LFGIWCLTCFLSSFILYAYHESWTKFARERSQEFSLILFGL 194
>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = +3
Query: 204 GQYVSTSTASTNRRLSMPTKSSTMLQIAWQSRATRCICTHTQCSLPNLA 350
G V S + L +P+KS + ++I W TQ PN A
Sbjct: 267 GDIVRYSWKTAKDLLELPSKSQSSIEIDWHEDDDTPTLNFTQKKKPNPA 315
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 407 LLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDLT 508
+LEE + Q L A + +T +I KIDD+T
Sbjct: 491 ILEENVLQPLLVNISAIQLAAETTKMIMKIDDIT 524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,589
Number of Sequences: 5004
Number of extensions: 49377
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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