Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15d17
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 144 8e-36
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 141 4e-35
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 30 0.16
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 2.7
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 25 4.6
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 4.6
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 4.6
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 6.1
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 6.1
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 6.1
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 6.1
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 6.1
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 8.1
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 144 bits (348), Expect = 8e-36
Identities = 72/142 (50%), Positives = 86/142 (60%)
Frame = +3
Query: 60 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 239
SKVS + V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 2 SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 240 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 419
M +C+LGD D AK V M SE LIKQIPR
Sbjct: 62 MSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121
Query: 420 LLGPGLNKAGKFPGLLSHQESM 485
LLGPGL+KAGKFP +SH + +
Sbjct: 122 LLGPGLSKAGKFPSPVSHSDDL 143
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 141 bits (342), Expect = 4e-35
Identities = 72/142 (50%), Positives = 87/142 (61%)
Frame = +3
Query: 60 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 239
SKVS ++ V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 2 SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 240 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 419
M +C+LGD D AK V M SE LIKQIPR
Sbjct: 62 MAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPR 121
Query: 420 LLGPGLNKAGKFPGLLSHQESM 485
LLGPGL+KAGKFP +SH + +
Sbjct: 122 LLGPGLSKAGKFPSPVSHADDL 143
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 30.3 bits (65), Expect = 0.16
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +3
Query: 42 LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 206
+T+K++ V ++ Y C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 920 VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 2.7
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = -3
Query: 282 PHHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 103
P H A LQE A AA+ L+ ++NA G +S D +AL P S +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373
Query: 102 RHSRTRRACH 73
HS+++ + H
Sbjct: 374 SHSQSQNSLH 383
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 25.4 bits (53), Expect = 4.6
Identities = 13/56 (23%), Positives = 30/56 (53%)
Frame = -2
Query: 169 FRPI*SSTVSKKLRFLSLED*RTAFTHS*SVSRDTLDDILFVREPPITTLGSCKKK 2
F + S K ++ E+ + +F + SV++D+ D +++ P+T + SC+ +
Sbjct: 96 FNVVKESNDKPKENLVTSEECKASFFSTDSVNKDSTIDYDALQKDPLTYVKSCRAR 151
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 4.6
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 51 KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 149
K K DT+ E A LQSS DK NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 4.6
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +3
Query: 93 VNAVLQSSKDKKRNFLETV 149
+NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.0 bits (52), Expect = 6.1
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 203 GETLVLLWVIVLQTNLKLYSLQKVTFLVLRGLKN 102
G L LW IV+ T L + F VLR L N
Sbjct: 1184 GSKLTKLWKIVVMTVSFLVGAWLIIFYVLRKLSN 1217
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 72 RDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRF 200
++ L++ V SK+ + T+E Q+ N+D QK F
Sbjct: 440 QNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEF 482
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 6.1
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +3
Query: 69 SRDTLYECVNAVLQSSKDKK--RNFLETVELQIGLKN--YDPQKDKRFSGTVKLKYI 227
S DT Y VNA +DKK RN TV + G + P ++ K+ YI
Sbjct: 713 SPDTSYSLVNAFAYCDRDKKNVRNCSFTVIFRDGSEETLCAPTEESMIEWVAKINYI 769
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = -1
Query: 368 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLITML 267
+G+F+ +LF LIQ + + W + + +T++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.0 bits (52), Expect = 6.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 397 H*SSRFPVCWVPV*TKLVNSLVFSPTRS 480
H S RFP PV T L NSL++ T S
Sbjct: 903 HVSGRFPQVSSPVNTALSNSLLYIRTLS 930
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 8.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 378 HQIFWPVS*QAFCSYSIFSKPQHPYMAHSRF 286
HQ+F+P + + SY + PQ Y + S +
Sbjct: 415 HQVFYPPTSTSVSSYGLGKTPQPAYGSSSPY 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,766
Number of Sequences: 5004
Number of extensions: 38127
Number of successful extensions: 120
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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