Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15d17
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 142 1e-34
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 140 5e-34
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 139 1e-33
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 138 2e-33
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 36 0.023
05_03_0678 - 16871481-16871620,16871836-16871881,16872170-168722... 35 0.030
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020... 29 2.6
03_02_0221 + 6533643-6533687,6533860-6533955,6535323-6535682,653... 28 4.6
01_05_0208 - 19291953-19292552,19293027-19293134,19293231-192933... 27 8.1
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 142 bits (345), Expect = 1e-34
Identities = 68/131 (51%), Positives = 87/131 (66%)
Frame = +3
Query: 60 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 239
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSDALREAISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 240 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 419
M+VC+LGD QH +EA+ + + M SE++IKQIPR
Sbjct: 62 MKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121
Query: 420 LLGPGLNKAGK 452
LLGPGLNKAGK
Sbjct: 122 LLGPGLNKAGK 132
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 140 bits (339), Expect = 5e-34
Identities = 69/142 (48%), Positives = 92/142 (64%)
Frame = +3
Query: 60 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 239
SK+ D L E ++ + S++K+R F+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSDALREAISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 240 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 419
++VC+LGD QH +EA+ + + M SE++IKQIPR
Sbjct: 62 LKVCMLGDAQHVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121
Query: 420 LLGPGLNKAGKFPGLLSHQESM 485
LLGP GKFP L++HQES+
Sbjct: 122 LLGP-----GKFPTLVTHQESL 138
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 139 bits (336), Expect = 1e-33
Identities = 71/142 (50%), Positives = 90/142 (63%)
Frame = +3
Query: 60 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 239
SK+ + L E ++ V+ K+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQTEALKEAISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 240 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 419
M+VC+LGD QH +EA+ + + M SE++IKQIPR
Sbjct: 62 MKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121
Query: 420 LLGPGLNKAGKFPGLLSHQESM 485
LLGP GKFP L++HQES+
Sbjct: 122 LLGP-----GKFPTLVTHQESL 138
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 138 bits (334), Expect = 2e-33
Identities = 71/141 (50%), Positives = 90/141 (63%)
Frame = +3
Query: 63 KVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 242
K+ + L E ++ V+ SK+K R F ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPKM
Sbjct: 21 KLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKM 80
Query: 243 QVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRL 422
+VC+LGD QH +EA+ + + M SE++IKQIPRL
Sbjct: 81 KVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRL 140
Query: 423 LGPGLNKAGKFPGLLSHQESM 485
LGP GKFP L++HQES+
Sbjct: 141 LGP-----GKFPTLVTHQESL 156
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 35.5 bits (78), Expect = 0.023
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 111 SSKDKKRNFLETVELQIGLKNYDPQK-DKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAK 287
S+ +KKRNF ETVE + L DP++ D+ G + L + ++V V + DEA+
Sbjct: 279 SANEKKRNFTETVEAHVML-GVDPRRGDQMVRGALTLPHGTGKTVRVAVFAEGPAADEAR 337
>05_03_0678 -
16871481-16871620,16871836-16871881,16872170-16872243,
16872495-16872552,16872640-16872702,16872891-16873012,
16873132-16873247,16873367-16873428,16873497-16873589,
16874061-16874138,16874248-16874423,16874500-16874550,
16874964-16875078
Length = 397
Score = 35.1 bits (77), Expect = 0.030
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +3
Query: 36 GSLTNKMSSKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTV 212
G+ + +S + T +E + + LQS K K R +E + D + K + +
Sbjct: 242 GNRRSSISKEDVNATRWEQLKSTLQSGKHKGLRRCIEEIVFSYTYPRLDMEVSKHMNHLL 301
Query: 213 KLKYIPRPKM-QVCVLGDQQHCDEAKTLNVPCM 308
K + PK +VCV D +CD+ VP +
Sbjct: 302 KAPFCIHPKTGRVCVPIDPNNCDDFDPTTVPTL 334
>03_02_0829 -
11599665-11600364,11600853-11601076,11601786-11602000,
11602300-11602377,11602593-11603907
Length = 843
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 210 QCRRNACPSVGHSSSDQFEALQSPKS 133
Q RN PS+ H +SD F + SP S
Sbjct: 81 QKSRNLSPSISHQASDSFSPVPSPLS 106
>03_02_0221 +
6533643-6533687,6533860-6533955,6535323-6535682,
6537106-6537177,6537374-6537697
Length = 298
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 243 AFSAAVCILALQCRRNACPSVGH 175
A A VCI L+CR+ CP H
Sbjct: 110 ASRAEVCIFCLRCRQVLCPRCSH 132
>01_05_0208 -
19291953-19292552,19293027-19293134,19293231-19293344,
19293464-19293573,19293720-19293808,19293942-19294138,
19294241-19294402,19294501-19294619,19294739-19294826,
19294911-19295016,19295157-19295245,19295351-19295503,
19295631-19295723,19295823-19295889,19296217-19296329,
19296453-19296548,19297963-19298139
Length = 826
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 129 RNFLETVELQIGLKNYDPQKDKRFSGTV 212
+N++ + +GLKNY P +K +G V
Sbjct: 540 KNYISLLSATVGLKNYGPSFEKMPTGIV 567
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,233,188
Number of Sequences: 37544
Number of extensions: 245033
Number of successful extensions: 627
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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