Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15d16
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    26   4.2  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   4.2  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   5.6  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   9.7  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   9.7  

>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 192 VTSAGPCCFCDSPEI 236
           V   GPC FCD+P I
Sbjct: 221 VEGIGPCTFCDNPVI 235


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = +1

Query: 238 FGENVQKVGDDLFTYGSKPIALLVKSTGLSRIKVVESLRTLLKYDL 375
           F  ++  +GD+ F+Y +    L + +  + RI  +E+ ++ L+ ++
Sbjct: 378 FNNSMHSIGDNNFSYNNSEAVLQIFAQSVPRILNIEAKKSKLENNI 423


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +1

Query: 295 IALLVKSTGLSRIKVVESLRTLLKYDLAMFEPTPNEVIADYRLIPDNVLLMIRYPRYLLQ 474
           I L +K+  +   ++ E L   L Y LA+   + N+      L+   +L   ++P+ LLQ
Sbjct: 299 IFLFLKNKNVYYSRLDEWLHITLNYGLALRSGSNNQEEEVLHLLYKYLLFSPKFPKSLLQ 358

Query: 475 IKTKYGSEAEILIE 516
               + S+  I  E
Sbjct: 359 YVITFFSKPNITEE 372


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 241 GENVQKVGDDLFTYGSK 291
           GE+V K GD+ F YG +
Sbjct: 34  GESVIKYGDEAFVYGGR 50


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +1

Query: 265 DDLFTYGSKPIALLVKSTGLSRIKVVESLRTLLKYDLAMFEPTPNEVIADYRLIPD 432
           +DL     +P+ L    T + +++  ++++    Y   M   TP+E  A + + PD
Sbjct: 43  NDLTDSSYEPLTLSYNDTQIQQLQRRDTVQCAFPYGDKMVAVTPDEGNAGWAMSPD 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,064
Number of Sequences: 5004
Number of extensions: 50615
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)