Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15d16
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0257 + 27932119-27932187,27932371-27932470,27932560-279326... 30 1.4
12_01_0184 + 1359376-1359564,1359720-1359774,1360552-1360748,136... 28 4.3
03_02_0223 + 6548810-6549025,6549159-6549211,6549457-6549492,654... 28 5.6
12_01_1112 - 11866376-11866447,11866528-11866662,11866772-118669... 27 7.5
05_03_0425 - 13808840-13809414,13809552-13809765,13810268-138113... 27 7.5
01_06_0028 - 25746250-25746526,25746839-25746975,25747089-257472... 27 7.5
01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365,738... 27 7.5
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736... 27 7.5
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 27 9.9
11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,145... 27 9.9
>01_06_0257 +
27932119-27932187,27932371-27932470,27932560-27932666,
27933619-27933621,27933833-27933866,27934081-27934229,
27934676-27934822,27935019-27935129,27935548-27935647,
27936115-27936165,27937297-27937334,27937448-27937540,
27937744-27937827,27939101-27939262
Length = 415
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Frame = +1
Query: 295 IALLVKSTGLSRIKVVESLRTLLKYDLAMFEPTP----NEVIADYRLIPDNVLLMIRYPR 462
++ +V+ LS +V SL L++++ P ++ + Y I DN++ R+ +
Sbjct: 22 VSEIVRRLELSPGQVKNSLLVLIQHNCVQAFNAPRGNGDKTVTHYLAIFDNIVHRQRFSK 81
Query: 463 YLLQIKTKYGSEAEILIEELLQKACST 543
+L I+ +E L+E LLQ T
Sbjct: 82 FLSIIRADIPELSEALLEGLLQNGSIT 108
>12_01_0184 +
1359376-1359564,1359720-1359774,1360552-1360748,
1360998-1361119,1361205-1361352,1361501-1361570,
1361675-1361820,1362021-1362113,1362675-1362819,
1363523-1363704,1363748-1363819,1364174-1364277,
1364417-1364473,1364560-1364746,1364836-1364979,
1365092-1365214
Length = 677
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 271 LFTYGSKPIALLVKSTGL-SRIKVVESLRTLLKYDLAMFE---PTPNEVI 408
+ +GS P++L + +TGL +R+ + S T++ M E PN+V+
Sbjct: 590 IINFGSDPVSLTISATGLQARVNALGSTATVITSSNVMDENSFSNPNKVV 639
>03_02_0223 +
6548810-6549025,6549159-6549211,6549457-6549492,
6549786-6549933,6550078-6550185,6550757-6550824,
6551846-6551969,6552067-6552213,6552545-6552805,
6552885-6553169,6553796-6553939,6554565-6554915,
6555405-6555470,6555598-6555768
Length = 725
Score = 27.9 bits (59), Expect = 5.6
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = -1
Query: 425 INL*SAITSFGVGSNIAKSYFSNVRRLSTT---LILERPVLFTNKAMGL---LPYVNRSS 264
IN SAI +G ++A SY +N+R + T ++++ + GL +PY+ S
Sbjct: 541 INCLSAIQEPLMGQDVATSYINNLRSMIETHLHTLVDKEADSILRKCGLSNKMPYIKDYS 600
Query: 263 PTFCTFSPKYLWRITETTRPS*CDILNSSYG 171
T + L I ET+ + L + YG
Sbjct: 601 STGSKDDARPLADIVETSPQMLLECLKAFYG 631
>12_01_1112 -
11866376-11866447,11866528-11866662,11866772-11866921,
11867263-11867338,11867426-11867559,11867655-11867747,
11868456-11868589,11868696-11868744,11869271-11869441,
11870291-11870452
Length = 391
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 400 EVIADYRLIPDNVLLMIRY-PRYL 468
EV +YRL+PD + L + Y RYL
Sbjct: 203 EVAEEYRLVPDTLYLTVNYIDRYL 226
>05_03_0425 -
13808840-13809414,13809552-13809765,13810268-13811317,
13811616-13811687,13812075-13812334,13812647-13812731
Length = 751
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -1
Query: 353 RRLSTTLILERPVLFTNKAMGLLPYVNRSSPTFCTFSPKYLWRITETTRPS 201
RRL+ L L T +A+ L SSP F F+PK L + P+
Sbjct: 175 RRLAAAATLFSSTLRTARALNSLLAAICSSPAFLRFAPKVLLLAAPSVSPN 225
>01_06_0028 -
25746250-25746526,25746839-25746975,25747089-25747292,
25747747-25747855,25747951-25748081,25748156-25748253,
25748827-25749018,25749075-25749177,25749275-25749445
Length = 473
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +1
Query: 376 AMFEPTPNEVIADYR--LIPDNVLLMIRYPR 462
+ F+PTP+E I ++R LI D +++ +R R
Sbjct: 411 SQFKPTPDEKIIEFRNILIQDGLVVFVRLSR 441
>01_01_0937 -
7388230-7388283,7388957-7389091,7389201-7389365,
7389436-7389516,7389692-7389767,7389855-7389988,
7390082-7390174,7390885-7391018,7391125-7391533,
7392381-7392593
Length = 497
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 400 EVIADYRLIPDNVLLMIRY-PRYL 468
EV +YRL+PD + L + Y RYL
Sbjct: 283 EVAEEYRLVPDTLYLTVNYIDRYL 306
>01_01_0933 -
7368672-7368785,7368860-7368895,7369581-7369715,
7369825-7369989,7370060-7370140,7370316-7370391,
7370479-7370612,7370706-7370798,7371860-7372188,
7372290-7372350,7372407-7372778
Length = 531
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +1
Query: 400 EVIADYRLIPDNVLLMIRY-PRYL 468
EV +YRL+PD + L + Y RYL
Sbjct: 285 EVAEEYRLVPDTLYLTVNYIDRYL 308
>12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 353 RRLSTTLILERPVLFTNKAMGLLPYVNRSSPTFCTFSPKYLWRITETTRP 204
RRL+ L L T +A+ L SSP F F+PK L + P
Sbjct: 1319 RRLAAAATLFSSTLRTARALNSLLAAICSSPAFLRFAPKVLLLAAPSVSP 1368
>11_01_0185 +
1455635-1455817,1455997-1456051,1456415-1456611,
1456850-1457206,1457355-1457424,1457527-1457672,
1457786-1457831,1457910-1457962,1458507-1458651,
1459268-1459386,1459494-1459565,1459872-1459975,
1460117-1460173,1460260-1460452,1460535-1460678,
1460825-1460927,1461444-1461592,1462674-1462728,
1464037-1464227,1464580-1464701,1464831-1464978,
1465354-1465423,1465499-1465644,1466097-1466247,
1466614-1466732,1466807-1466848,1466849-1466961,
1467496-1467552,1467642-1467834,1468040-1468183,
1468567-1468665
Length = 1280
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 271 LFTYGSKPIALLVKSTGL-SRIKVVESLRTLLKYDLAMFE 387
+ +GS P++L + +TGL +R+ + S T+L M E
Sbjct: 600 IINFGSDPVSLTISATGLQARVNALGSTATVLTSSNVMDE 639
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,207,847
Number of Sequences: 37544
Number of extensions: 272349
Number of successful extensions: 509
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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