Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15d16
         (548 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004424-1|AAH04424.1|  411|Homo sapiens POLR3C protein protein.       77   3e-14
BC002586-1|AAH02586.1|  534|Homo sapiens polymerase (RNA) III (D...    77   3e-14
AY091463-1|AAM12033.1|  534|Homo sapiens RNA polymerase III subu...    77   3e-14
AJ238221-1|CAB41919.1|  534|Homo sapiens RNA polymerase III subu...    77   3e-14
U93867-1|AAB63675.1|  533|Homo sapiens RNA polymerase III subuni...    76   7e-14
AK223413-1|BAD97133.1|  534|Homo sapiens polymerase (RNA) III (D...    76   7e-14

>BC004424-1|AAH04424.1|  411|Homo sapiens POLR3C protein protein.
          Length = 411

 Score = 77.4 bits (182), Expect = 3e-14
 Identities = 38/106 (35%), Positives = 65/106 (61%)
 Frame = +1

Query: 208 RVVSVILQRYFGENVQKVGDDLFTYGSKPIALLVKSTGLSRIKVVESLRTLLKYDLAMFE 387
           ++ S++LQ +FGE V+K+G  L   GS+P+ ++   TG S  +V ++L  L++++L  ++
Sbjct: 7   KLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ 66

Query: 388 PTPNEVIADYRLIPDNVLLMIRYPRYLLQIKTKYGSEAEILIEELL 525
                V+ +Y      VL M+RYPRY+   KT Y    E+++EELL
Sbjct: 67  VHKRGVV-EYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111


>BC002586-1|AAH02586.1|  534|Homo sapiens polymerase (RNA) III (DNA
           directed) polypeptide C (62kD) protein.
          Length = 534

 Score = 77.4 bits (182), Expect = 3e-14
 Identities = 38/106 (35%), Positives = 65/106 (61%)
 Frame = +1

Query: 208 RVVSVILQRYFGENVQKVGDDLFTYGSKPIALLVKSTGLSRIKVVESLRTLLKYDLAMFE 387
           ++ S++LQ +FGE V+K+G  L   GS+P+ ++   TG S  +V ++L  L++++L  ++
Sbjct: 7   KLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ 66

Query: 388 PTPNEVIADYRLIPDNVLLMIRYPRYLLQIKTKYGSEAEILIEELL 525
                V+ +Y      VL M+RYPRY+   KT Y    E+++EELL
Sbjct: 67  VHKRGVV-EYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111


>AY091463-1|AAM12033.1|  534|Homo sapiens RNA polymerase III subunit
           RPC62 protein.
          Length = 534

 Score = 77.4 bits (182), Expect = 3e-14
 Identities = 38/106 (35%), Positives = 65/106 (61%)
 Frame = +1

Query: 208 RVVSVILQRYFGENVQKVGDDLFTYGSKPIALLVKSTGLSRIKVVESLRTLLKYDLAMFE 387
           ++ S++LQ +FGE V+K+G  L   GS+P+ ++   TG S  +V ++L  L++++L  ++
Sbjct: 7   KLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ 66

Query: 388 PTPNEVIADYRLIPDNVLLMIRYPRYLLQIKTKYGSEAEILIEELL 525
                V+ +Y      VL M+RYPRY+   KT Y    E+++EELL
Sbjct: 67  VHKRGVV-EYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111


>AJ238221-1|CAB41919.1|  534|Homo sapiens RNA polymerase III subunit
           protein.
          Length = 534

 Score = 77.4 bits (182), Expect = 3e-14
 Identities = 38/106 (35%), Positives = 65/106 (61%)
 Frame = +1

Query: 208 RVVSVILQRYFGENVQKVGDDLFTYGSKPIALLVKSTGLSRIKVVESLRTLLKYDLAMFE 387
           ++ S++LQ +FGE V+K+G  L   GS+P+ ++   TG S  +V ++L  L++++L  ++
Sbjct: 7   KLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ 66

Query: 388 PTPNEVIADYRLIPDNVLLMIRYPRYLLQIKTKYGSEAEILIEELL 525
                V+ +Y      VL M+RYPRY+   KT Y    E+++EELL
Sbjct: 67  VHKRGVV-EYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111


>U93867-1|AAB63675.1|  533|Homo sapiens RNA polymerase III subunit
           protein.
          Length = 533

 Score = 76.2 bits (179), Expect = 7e-14
 Identities = 37/106 (34%), Positives = 65/106 (61%)
 Frame = +1

Query: 208 RVVSVILQRYFGENVQKVGDDLFTYGSKPIALLVKSTGLSRIKVVESLRTLLKYDLAMFE 387
           ++ S++LQ +FGE V+K+G  L   GS+P+ ++   TG S  +V ++L  L++++L  ++
Sbjct: 7   KLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ 66

Query: 388 PTPNEVIADYRLIPDNVLLMIRYPRYLLQIKTKYGSEAEILIEELL 525
                V+ +Y      VL ++RYPRY+   KT Y    E+++EELL
Sbjct: 67  VHKRGVV-EYEAQCSRVLRIVRYPRYIYTTKTLYSDTGELIVEELL 111


>AK223413-1|BAD97133.1|  534|Homo sapiens polymerase (RNA) III (DNA
           directed) polypeptide C (62kD) variant protein.
          Length = 534

 Score = 76.2 bits (179), Expect = 7e-14
 Identities = 38/106 (35%), Positives = 64/106 (60%)
 Frame = +1

Query: 208 RVVSVILQRYFGENVQKVGDDLFTYGSKPIALLVKSTGLSRIKVVESLRTLLKYDLAMFE 387
           ++ S++LQ +FGE V+K+G  L   GS+P+ ++   TG S  +V ++L  L +++L  ++
Sbjct: 7   KLCSLLLQEHFGEIVEKIGVRLIRTGSQPLRVIAHDTGTSLDQVKKALCVLAQHNLVSYQ 66

Query: 388 PTPNEVIADYRLIPDNVLLMIRYPRYLLQIKTKYGSEAEILIEELL 525
                V+ +Y      VL M+RYPRY+   KT Y    E+++EELL
Sbjct: 67  VHKRGVV-EYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,846,124
Number of Sequences: 237096
Number of extensions: 1650232
Number of successful extensions: 2403
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2397
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)