Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15d16
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   6.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   6.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.2  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   8.2  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 405 NCRLQINSRQCAFNDSISKVFTTNQNEV 488
           N  L     Q A+ ++ S VFT   NE+
Sbjct: 213 NSELLFKELQAAYEETFSLVFTKIDNEI 240


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 325 KDQYSSLIKQWVYCHM*IDR 266
           KD++ S+ + W Y  M +DR
Sbjct: 529 KDKFESVEEDWKYVAMVLDR 548


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 325 KDQYSSLIKQWVYCHM*IDRRQLSV 251
           +D Y    + W Y  M IDR QL +
Sbjct: 461 EDLYIQTREDWKYVAMVIDRLQLYI 485


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 84  IETTAFCIYKHKTSNRHG*K 25
           +E +   +YK K S  HG K
Sbjct: 193 VEKSELWVYKSKASEEHGNK 212


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 417 QINSRQCAFNDSISKVFTTNQN 482
           Q +S  C  N  + ++FT++QN
Sbjct: 146 QRSSEFCGKNIGMKRIFTSSQN 167


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 541 WNMPFATTLQSIFLLHYRTSF*FVVNTLDIESL 443
           W +P  +T     LL+YR S    V  L + +L
Sbjct: 303 WQLPHNSTNPPNILLYYRDSLALSVFALILTAL 335


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 84  IETTAFCIYKHKTSNRHG 31
           +E +   +YK K S  HG
Sbjct: 161 VEKSELWVYKSKASEEHG 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,029
Number of Sequences: 438
Number of extensions: 3085
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)