Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15d14
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 32 0.23
08_02_1330 + 26191062-26191314,26191894-26191961,26192125-261923... 32 0.23
04_01_0260 - 3506672-3508981 30 0.92
02_02_0145 + 7163922-7165604 30 0.92
03_02_1027 + 13422698-13422914,13424899-13424959,13425366-134254... 28 2.8
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423... 28 2.8
11_01_0417 - 3214320-3214435,3214606-3214702,3214766-3214768,321... 27 4.9
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 27 4.9
05_03_0125 + 8738770-8739237,8739266-8739742 27 4.9
04_04_0500 - 25677767-25680850 27 4.9
01_06_0958 - 33357689-33357997,33358135-33358284,33358371-333585... 27 4.9
08_02_1198 + 25204896-25206755 27 8.6
06_01_0867 - 6600847-6601413,6601954-6602181 27 8.6
03_06_0774 + 36171177-36173099 27 8.6
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 31.9 bits (69), Expect = 0.23
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Frame = +1
Query: 31 NLRRVNKLYPNQASFLADNTRLLTSTPAGF--TNVLNAPSVRNLGNNRYQPGYQLSNNRF 204
NL ++ N A + NT +L + F N + + ++GN +LSNN+
Sbjct: 488 NLHMLDLSGNNLAGSIPSNTAMLKNVVMLFLQNNEFSGSIIEDIGNLTKLEHLRLSNNQL 547
Query: 205 VST--SDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMD 324
ST + + ++ RN+F G I L+Q+ +MD
Sbjct: 548 SSTVPPSLFHLDSLIELDLSRNLFSGALPVDIGHLKQIYKMD 589
>08_02_1330 +
26191062-26191314,26191894-26191961,26192125-26192355,
26192736-26192837,26192893-26192955,26193910-26193984
Length = 263
Score = 31.9 bits (69), Expect = 0.23
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 229 ITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTKQT-RSNAVRQNFPETNVR 405
+ R + VP++R G+ PQ+NS Q+ + +VP+ K + V++ P N
Sbjct: 108 VMRKSSVPDLREKLSGVQRPQLNSTVQIPK--SVPEISTSAKPVQKREPVQKREPPVNAA 165
Query: 406 TP 411
P
Sbjct: 166 LP 167
>04_01_0260 - 3506672-3508981
Length = 769
Score = 29.9 bits (64), Expect = 0.92
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 199 RFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTKQTRSNAVR 378
RF+ + ++ R N++ P ++ G Q N LRQ R ++ ++ + Q + NA
Sbjct: 359 RFILSLNLFRFLVNSNNPTRYRMWSGTIG-QYNLLRQCTRQEDEKTSNFWSSQWKKNAPE 417
Query: 379 QNFPETNVRTPEGVQ 423
+ E G+Q
Sbjct: 418 DTWMEYEYHNSRGIQ 432
>02_02_0145 + 7163922-7165604
Length = 560
Score = 29.9 bits (64), Expect = 0.92
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +1
Query: 70 SFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDV 249
SF A+N + P + + N ++ NL N+ ++ N F ST N+I ++V
Sbjct: 475 SFTAENNQFSGELPTDMSRLANL-TMLNLAGNQLLTTVKIYINNFASTLPSNKIVSKSNV 533
Query: 250 PNIRNVFQG 276
I QG
Sbjct: 534 KEIGLQSQG 542
>03_02_1027 +
13422698-13422914,13424899-13424959,13425366-13425464,
13428959-13429361
Length = 259
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/54 (22%), Positives = 23/54 (42%)
Frame = +3
Query: 264 CISGHFRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSK 425
C++ H S+ +A + + AR L + + + D + H R C+K
Sbjct: 204 CLTAHATASDGKVAQLETELEVARDDLQKMKEIVASNDVAFQNDSKIHPRNCAK 257
>01_06_1263 +
35840502-35841308,35841763-35841969,35842272-35842370,
35843361-35843464,35844521-35844698,35844774-35845244,
35845383-35845523,35846290-35846349,35846427-35846490,
35847295-35847524,35847606-35847704
Length = 819
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 151 NLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNV 330
N G ++ PGY SNN + S S + +N V + +Q + N+ + + N
Sbjct: 143 NAGAHQTAPGYATSNNYYQSNSWTGGSSGDNHVQS----YQSYTPSDTNAAQSSSSLPN- 197
Query: 331 PDFHYH 348
+HYH
Sbjct: 198 NSYHYH 203
>11_01_0417 -
3214320-3214435,3214606-3214702,3214766-3214768,
3215054-3215196,3215309-3215348,3215713-3215765,
3215889-3215962,3216081-3216163,3216287-3216355,
3216456-3216800
Length = 340
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/80 (23%), Positives = 29/80 (36%)
Frame = +1
Query: 31 NLRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVS 210
N R++N + + S A R++ ++ S R YQ R +
Sbjct: 251 NARQINNTHHSTTSSSAPAWRMVKEQKDSHLDLERLDSARKRLQENYQEAQNAKKQRTIQ 310
Query: 211 TSDINRITRNNDVPNIRNVF 270
DIN I + P RN F
Sbjct: 311 VMDINEIPK----PKNRNAF 326
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 184 QLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINS 300
+ ++N F+S+S I+ + +V R VF GI P I S
Sbjct: 536 RFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVS 574
>05_03_0125 + 8738770-8739237,8739266-8739742
Length = 314
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 285 PSNKLIAP--IAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSKR 428
P K++AP +A+HG+R + L + + I ++ KL R+ A KR
Sbjct: 243 PLLKMVAPAVVASHGRRESIELHNDEEKIAAAKRKL-REGYQDAEEAKKR 291
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 190 SNNRFVSTSDINRITRNNDVPNIRNVFQGISDP 288
S++ F + ++ + DVPN R VF GI+ P
Sbjct: 190 SSSVFCEAALVDMYAKCGDVPNARRVFDGIACP 222
>01_06_0958 -
33357689-33357997,33358135-33358284,33358371-33358511,
33359807-33360592
Length = 461
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 270 SGHFRPSNKLIAPIAAHGQRARLSLPHQTDA 362
S R + +A AHG+ L LPH TDA
Sbjct: 192 SSESRGATLAVAAATAHGREEPLLLPHGTDA 222
>08_02_1198 + 25204896-25206755
Length = 619
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 28 TNLRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQ 186
T+L VN Q ++ N S+PA N N+ + N+ +R GYQ
Sbjct: 430 TSLSHVNTTETLQHQYVQGN---FVSSPAAVVNNYNSNQITNVNPSRIYMGYQ 479
>06_01_0867 - 6600847-6601413,6601954-6602181
Length = 264
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 233 LVTTMSPTYAMYFRAFQTLK*THCANCGAW 322
L+ M+P A++F +F T+K T +CG W
Sbjct: 162 LIAGMTPKTAIFFFSFATIK-TVDDHCGLW 190
>03_06_0774 + 36171177-36173099
Length = 640
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +1
Query: 187 LSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQL 312
LS++ VS S I+ ++ + + R+VFQ IS+P++ S L
Sbjct: 489 LSSDISVSNSLIDMYSKCKCMGDARSVFQSISEPKVVSWNAL 530
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,864,859
Number of Sequences: 37544
Number of extensions: 243700
Number of successful extensions: 703
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -