Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15d14
(433 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr... 30 0.62
Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical pr... 30 0.62
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ... 30 0.62
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 29 1.4
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 29 1.4
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z81078-1|CAB03075.3| 441|Caenorhabditis elegans Hypothetical pr... 29 1.9
U80454-4|AAB37876.3| 896|Caenorhabditis elegans Prion-like-(q/n... 29 1.9
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 29 1.9
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 29 1.9
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 27 5.8
Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical pr... 27 7.7
U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily ass... 27 7.7
U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily ass... 27 7.7
AL110498-2|CAB54468.1| 254|Caenorhabditis elegans Hypothetical ... 27 7.7
AF099917-2|AAC68785.1| 235|Caenorhabditis elegans Hypothetical ... 27 7.7
>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
F26A3.3 protein.
Length = 1632
Score = 30.3 bits (65), Expect = 0.62
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 355 VWCGNESLARCPCAAIGAMSLFEGLKCPEIHCVC 254
V G L + PC G + +FE + PE+H +C
Sbjct: 920 VLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMC 953
>Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical
protein F58H1.5 protein.
Length = 323
Score = 30.3 bits (65), Expect = 0.62
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 154 LGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNI 258
+ + +++P Q S+N+FVS SDI I + D +
Sbjct: 28 ISDEKFEPAEQCSSNQFVSISDIGTIYDSEDTQQL 62
>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
polymerase relatedEGO-1 protein.
Length = 1632
Score = 30.3 bits (65), Expect = 0.62
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 355 VWCGNESLARCPCAAIGAMSLFEGLKCPEIHCVC 254
V G L + PC G + +FE + PE+H +C
Sbjct: 920 VLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMC 953
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical
protein F26A3.8 protein.
Length = 1601
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 346 GNESLARCPCAAIGAMSLFEGLKCPEIHCVC 254
G L + PC G + +FE + PE+H +C
Sbjct: 896 GTVLLTKNPCIVPGDVRIFEAVDIPELHHMC 926
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 346 GNESLARCPCAAIGAMSLFEGLKCPEIHCVC 254
G L + PC G + +FE + PE+H +C
Sbjct: 896 GTVLLTKNPCIVPGDVRIFEAVDIPELHHMC 926
>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical
protein W10C6.1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 1.9
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Frame = +1
Query: 28 TNLRRVNKLYPNQASFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFV 207
T+L ++ + AS L D TR++ TP F+ + R+ G+ P L ++ V
Sbjct: 28 THLTQMCRRGDTNASLLRDFTRMIRDTPRNFSKNTQHGNDRDFGDLERDPDVDLLLSK-V 86
Query: 208 STSDINRITRNNDVPNIRNVF--QGISDPQINSLRQLRRMDNVPDFHYHTKQTRSNAVRQ 381
+ + +P +F +SD IN + + + + + TR N + +
Sbjct: 87 CLECVYVEPKEGAIPKANKIFISNFLSDMYINLVSVTGEVMKIIPIWKNAETTRKNLLEK 146
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 148 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 267
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>Z81078-1|CAB03075.3| 441|Caenorhabditis elegans Hypothetical
protein F36H2.2 protein.
Length = 441
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 44 SINCILIRPVFLLIIRVF*QALPPVSQMCSTRP 142
S N + + P +LLII AL P+ MC+ RP
Sbjct: 335 SANSLRLSPKYLLIISFLRFALIPMIAMCNVRP 367
>U80454-4|AAB37876.3| 896|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 66
protein.
Length = 896
Score = 28.7 bits (61), Expect = 1.9
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 124 NVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRN 264
NV NAP+V+N N + Q N + + N R ND PN++N
Sbjct: 611 NVQNAPNVQNASNVQNSQNGQNDKNDPNAQNSQNGQNRQND-PNVQN 656
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 148 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 267
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 148 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNV 267
RN GNNRY P ++ +R D NR+T N VP+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -1
Query: 352 WCGNESLARCPCAAIGAMSLFEGLKCPEIHCVCWGHRCYE 233
W E+ C+A G++ L++ P+ CVC + +E
Sbjct: 283 WSPTETGLLASCSADGSIKLWDTRSAPKDACVCTVQKAHE 322
>Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical
protein F13E6.4 protein.
Length = 442
Score = 26.6 bits (56), Expect = 7.7
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = +1
Query: 184 QLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTKQTR 363
QL N R + ++ + V + + +Q IS P +++ + P+F Y +Q
Sbjct: 297 QLQNERMMIQEKNAQLINSGLVDSPQPPYQAIS-PMSSTMMH----SHDPNFMYQQQQQA 351
Query: 364 SNAVRQNFPETNVRTPEGVQNA 429
N+ +Q P T + P QN+
Sbjct: 352 QNSQQQQTPHTLHQIPNQYQNS 373
>U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform b protein.
Length = 408
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 124 NVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPN 255
+ LN ++R+ N RY Y+L N + ++ N D+ N
Sbjct: 221 HTLNMLTIRSSTNERYNMEYELEENSDPIEDEKEKVVTNRDMIN 264
>U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform a protein.
Length = 406
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 124 NVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPN 255
+ LN ++R+ N RY Y+L N + ++ N D+ N
Sbjct: 221 HTLNMLTIRSSTNERYNMEYELEENSDPIEDEKEKVVTNRDMIN 264
>AL110498-2|CAB54468.1| 254|Caenorhabditis elegans Hypothetical
protein Y64G10A.3 protein.
Length = 254
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +3
Query: 255 HTQCISGHF---RPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRC 419
HT+ ++ HF RPSNK++ A+ ++ LP +T +T+L R + H+R C
Sbjct: 137 HTKFVA-HFLANRPSNKILGIAASKVCKSEEELPRET------RTELARLRCGHSRLC 187
>AF099917-2|AAC68785.1| 235|Caenorhabditis elegans Hypothetical
protein F54D10.5 protein.
Length = 235
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 160 NNRYQPGYQLSNNRFVSTSDINRITRNNDVPNI 258
NN+ QPG N D+ I RNN + N+
Sbjct: 2 NNQDQPGSSHQNEDSSPDDDVEEILRNNPMLNV 34
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,422,802
Number of Sequences: 27780
Number of extensions: 228448
Number of successful extensions: 638
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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