Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15d13
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.3  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   4.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.3  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 132 IDPNSIHGILQWRGF 176
           + P S+HG L WR F
Sbjct: 298 VPPLSLHGQLLWREF 312


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 277 ICMKECVEGKNNVVDMLNSKINM 345
           +CMKE    +  + D+   KINM
Sbjct: 32  VCMKEIGTAQQIIDDINEGKINM 54


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 25  RNMADAPYNVWSPLISASCLDKKATYL 105
           R++  A   V +PLIS   L  K TY+
Sbjct: 115 RSLLSADVAVATPLISMGALLGKTTYM 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,083
Number of Sequences: 438
Number of extensions: 3544
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)