Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15d10
         (121 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    23   5.6  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    22   9.8  

>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 55  EFYSQSEPSFEKQMTSF 5
           EF   +EP+F  Q+T F
Sbjct: 481 EFLCSNEPNFRSQLTEF 497


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 31  WARFASRILRVKHNQGMMSFTKIK*LFKKK 120
           W +FAS IL V  +  M    K++ +   K
Sbjct: 182 WGKFASEILTVDWDGAMEELGKLREMVDSK 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 395,289
Number of Sequences: 5004
Number of extensions: 3472
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 20
effective length of database: 2,262,398
effective search space used: 42985562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)