Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15d10
         (121 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   4.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   4.2  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               19   4.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       19   4.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   7.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    18   9.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    18   9.7  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     18   9.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    18   9.7  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 82  SSLDCVLHVEFYSQSEPSFEKQMTS 8
           +SLDC   +     SE  +EK  TS
Sbjct: 560 NSLDCFFTMNDLEPSEIFYEKIETS 584


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 82  SSLDCVLHVEFYSQSEPSFEKQMTS 8
           +SLDC   +     SE  +EK  TS
Sbjct: 560 NSLDCFFTMNDLEPSEIFYEKIETS 584


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 6   NDVICFSKL 32
           N +ICFSKL
Sbjct: 133 NFIICFSKL 141


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 116 FLNNYFILVNDIIP*LC 66
           FLNNY  L   I+   C
Sbjct: 403 FLNNYLFLAVGIVGGAC 419


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = -3

Query: 104 YFILVNDIIP 75
           +F+L+++IIP
Sbjct: 280 FFLLISEIIP 289


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 113 LNNYFILVNDIIP 75
           L+ +F+LV +IIP
Sbjct: 286 LHVFFLLVVEIIP 298


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 113 LNNYFILVNDIIP 75
           L+ +F+LV +IIP
Sbjct: 286 LHVFFLLVVEIIP 298


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 101 FILVNDIIP*LCFTRRILLAKRAQF 27
           FIL N+II  +  T  I+L K   F
Sbjct: 205 FILNNEIIRSIQGTGTIILKKTVCF 229


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -1

Query: 88   MTSSLDCVLHVEFY 47
            +T+++DC    E+Y
Sbjct: 959  ITTTIDCSTQSEYY 972


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,075
Number of Sequences: 438
Number of extensions: 266
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 20
effective length of database: 137,583
effective search space used:  2614077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)