Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15d08
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    26   4.2  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   7.3  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   7.3  
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S...    25   9.7  
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    25   9.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.7  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   9.7  

>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 92  YRSANAPAADINDTFLEKISIPRGHRDCCDAKVYETAVREFVEETGR 232
           Y+  NAPAA I DT+ E   +P GHR   + +   T + E +EE  R
Sbjct: 730 YKQLNAPAAAIPDTW-ELCLLP-GHR-IGEPEYLFTRIDESMEEEWR 773


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 233 FFDSAFIYKFPFTLQWKDDGVTYKYLIYVGV 325
           F D   IY +P T +W    +   Y IYV V
Sbjct: 118 FIDMLAIYAYPDTGEWMVWVIRILYYIYVAV 148


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 428 RRFNCENNAQPGHRGRSTNILNYMNDKQ 511
           R FN   +A+ G+   +TN ++  N++Q
Sbjct: 2   RFFNAHKSAEDGNYSETTNAISLKNERQ 29


>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
           Alg14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 266 FTLQWKDDGVTYKYLIYVGVV 328
           F +QW D    YK   Y+G+V
Sbjct: 189 FLVQWPDLATKYKRAEYIGIV 209


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 11  ICKMRNA-AGLFMIIEPDKAVLLCA 82
           +CK  +  AGLF+ +E DK  L+C+
Sbjct: 375 VCKYHSPKAGLFLWVELDKNRLICS 399


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 191  YETAVREFVEETGRFFDSAFIYKFPFTLQWKDDGVTYKY 307
            + +++ E    T   FD   I K   +    DDGV Y +
Sbjct: 2914 FASSISEGARNTTTVFDERHIEKLRLSRLMSDDGVVYPF 2952


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 335 NLIDVNAKPNTYTVKLLPGTFGND 406
           NL  +NAK +T    L P TF +D
Sbjct: 373 NLASLNAKDDTQNQLLWPSTFDDD 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,379
Number of Sequences: 5004
Number of extensions: 41182
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)