Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15d08
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0036 + 10468636-10468938,10469014-10469109,10469247-104694...    29   2.4  
03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058     29   3.2  
07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409...    28   4.3  
05_05_0256 - 23647736-23648947                                         28   4.3  
04_03_0923 + 20843477-20845044,20846081-20846996                       28   5.6  
06_03_0593 + 22596372-22596384,22596856-22597037,22597119-225973...    27   7.5  
03_06_0713 - 35687672-35689219                                         27   7.5  
03_05_1070 + 30125131-30127029                                         27   7.5  

>01_02_0036 +
           10468636-10468938,10469014-10469109,10469247-10469453,
           10470762-10471097,10471469-10471582,10471634-10471639
          Length = 353

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = -3

Query: 315 YIKYL*VTPSSFHCNVNGNL*MNALSKNRPVSSTNSRTAVS*TFASQQSR*PR 157
           Y +YL VT    H + + +L MN  + NRP  +   RTA + T  +QQ   PR
Sbjct: 170 YHQYLQVTQQQNHRHPDHHLIMNN-NNNRPSLAQTHRTAATTTATTQQFLEPR 221


>03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058
          Length = 339

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 153 YHEVIAIVATQKFTKLPCASLWKKLAGFLTARSSTSFHLRYNGKTTVSL 299
           YH    +   Q FT+ PC    +++A  LTARS      R  G+  VS+
Sbjct: 3   YHYRTVVSQQQNFTR-PCFGWSRRIAQQLTARSMAFLVERCGGEMVVSM 50


>07_03_1003 +
           23239829-23240121,23240257-23240349,23240785-23240993,
           23241585-23241729,23241809-23241881,23242165-23242311,
           23242411-23242536,23242653-23242712
          Length = 381

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 395 TCPATTSRCTCWVWRSRQSSCRARRLR 315
           +CPA+++R T W  R+R SS  A R R
Sbjct: 32  SCPASSARRTTWRPRARLSSGNAARAR 58


>05_05_0256 - 23647736-23648947
          Length = 403

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 389 PATTSRCTCWVWRSRQSSCRARRLRISNTCK*HRRL 282
           PA T+   CW  R R +SCR++  R +     HRRL
Sbjct: 362 PAETAASGCWGRRRRTTSCRSKPRRAT-----HRRL 392


>04_03_0923 + 20843477-20845044,20846081-20846996
          Length = 827

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 317 VGVVRGNLIDVNAKPNTYTVKLLPGTFGNDYRIMLK 424
           VG++    ID+      ++ KL  G+FG+ +R ML+
Sbjct: 488 VGIIAFRYIDLQRATKNFSKKLGGGSFGSVFRAMLR 523


>06_03_0593 +
           22596372-22596384,22596856-22597037,22597119-22597344,
           22597429-22597855,22598075-22598429,22598511-22599089
          Length = 593

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 373 GVRVGFG---VHVNQVAAHDAYVYQILVSDTVVFPL*RKWK 260
           GVR   G   VH+NQVA   +  Y I +S T V+   RKW+
Sbjct: 325 GVRTDKGFKEVHLNQVARSLSDHYGIEISRTQVYNHLRKWR 365


>03_06_0713 - 35687672-35689219
          Length = 515

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 389 PATTSRCTCWVWRSRQSSCRARR 321
           PAT S  TC + R R+S+  ARR
Sbjct: 4   PATVSHTTCAIQRRRRSTAPARR 26


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 118 GGGRVRAPVRATGTQQDSLVRLD 50
           GGGR  A  R+T TQ   ++RLD
Sbjct: 522 GGGRGEAAWRSTATQDSQVLRLD 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,649,758
Number of Sequences: 37544
Number of extensions: 264436
Number of successful extensions: 720
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)