Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15d08
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical...    32   0.31 
AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical...    32   0.31 
Z74039-4|CAA98500.1|   96|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeo...    27   8.9  
U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeo...    27   8.9  

>AL132858-16|CAB60486.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 434 SVAVLTLYDSRCQTCPATTSRCTCWVWRSRQSSCRARRLRISN 306
           +++V+  +D  C  C   +S C  W   ++   CR    RISN
Sbjct: 10  TISVVAAFDDECIKCDLRSSYCKTWENSTQSCECRDGFARISN 52


>AL117207-25|CAB61042.2|  538|Caenorhabditis elegans Hypothetical
           protein Y113G7A.5 protein.
          Length = 538

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 434 SVAVLTLYDSRCQTCPATTSRCTCWVWRSRQSSCRARRLRISN 306
           +++V+  +D  C  C   +S C  W   ++   CR    RISN
Sbjct: 10  TISVVAAFDDECIKCDLRSSYCKTWENSTQSCECRDGFARISN 52


>Z74039-4|CAA98500.1|   96|Caenorhabditis elegans Hypothetical
           protein K03B8.4 protein.
          Length = 96

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 310 QILVSDTVVFPL*RKWKLVDERAVKK 233
           QILV D +  PL +K K VD + VKK
Sbjct: 52  QILVFDQIKAPLPKKKKYVDSKQVKK 77


>U28993-8|AAK31496.1|  632|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform a protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +2

Query: 347 VNAKPNTYTVKLLPG---TFGNDYRIMLKPRRFNCENNAQPGHRGRSTNILNYMNDKQLI 517
           +N   +T T+   P    TFG+D   M++ +    E+   PG  G S N   Y   +   
Sbjct: 183 LNEDHHTNTIGQSPSPRSTFGSDPTPMIQRQLIKNEDGVSPGSMGFSKNHQGYQKPRNGD 242

Query: 518 TYDYSK 535
             +Y K
Sbjct: 243 RMEYEK 248


>U28993-7|AAL27244.1|  641|Caenorhabditis elegans C.elegans homeobox
           protein 38,isoform b protein.
          Length = 641

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +2

Query: 347 VNAKPNTYTVKLLPG---TFGNDYRIMLKPRRFNCENNAQPGHRGRSTNILNYMNDKQLI 517
           +N   +T T+   P    TFG+D   M++ +    E+   PG  G S N   Y   +   
Sbjct: 183 LNEDHHTNTIGQSPSPRSTFGSDPTPMIQRQLIKNEDGVSPGSMGFSKNHQGYQKPRNGD 242

Query: 518 TYDYSK 535
             +Y K
Sbjct: 243 RMEYEK 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,761,358
Number of Sequences: 27780
Number of extensions: 239823
Number of successful extensions: 627
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)