Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15d04
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313...    29   1.5  
12_02_0189 + 15165485-15168694                                         28   4.7  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     28   4.7  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    27   8.2  
03_02_0555 + 9431451-9431688,9432685-9432803,9432886-9433079,943...    27   8.2  

>08_01_0356 +
           3131214-3132443,3132584-3132778,3132892-3132972,
           3133324-3133383,3133466-3133560,3133660-3133816,
           3133896-3134021,3134398-3134478,3134557-3134647,
           3134735-3134868,3135068-3135136,3135219-3135308,
           3135405-3135508,3135594-3135762,3136066-3136134
          Length = 916

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +1

Query: 277 RFPHIDNNSNMA-TKRFFSGESSGEPLIKRMAMANSPKKIRENYKRINGKLMGKMTLSID 453
           R P  D+N N+  ++R   GESS      +  +  SP  ++++ K++  K+  K T+  +
Sbjct: 297 REPKADDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMKMKMKTKKTMK-N 355

Query: 454 NEYYYTFRI 480
           +++  T ++
Sbjct: 356 SQFSKTMKV 364


>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 261  LNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFENFD 121
            LNG  ++      +L+WR+++  V NN   D   R  F   D  + D
Sbjct: 913  LNGCNLKYYESKLNLSWRKVLKEVMNNKESDENNRWEFLNPDASDSD 959


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 112  CIVVEIFKIGFLKHCSKRVVKRCVVGHIYNQFPP 213
            C   EI +  +L H SK  +  C   H++N  PP
Sbjct: 1022 CQKFEIERKSWLSHLSKLTIHDCPHLHVHNPLPP 1055


>11_06_0542 +
           24777453-24777632,24777654-24778478,24778576-24779319,
           24779422-24780354,24780456-24780938,24780969-24781082,
           24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +1

Query: 343 GEPLIKRMA---MANSPKKIRENYKRINGKLMGKMTLSI 450
           GEP I +      AN+ K  ++  K++ GK+M +MT+ I
Sbjct: 632 GEPGIHKPGGDEYANAIKNTKQKIKQLTGKIMEQMTIQI 670


>03_02_0555 +
           9431451-9431688,9432685-9432803,9432886-9433079,
           9433174-9433430,9433544-9433650,9433715-9433888,
           9434359-9434490,9434776-9434955,9435062-9435265
          Length = 534

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 361 RMAMANSPKKIRENYKRINGKLM 429
           + AM N+P++ R N  R+NG +M
Sbjct: 361 KCAMRNTPRQYRNNRGRMNGNMM 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,358,619
Number of Sequences: 37544
Number of extensions: 246463
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)