Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15c24
(489 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1090 + 24254172-24254624 29 2.6
05_07_0203 + 28391707-28392165 29 2.6
03_02_0560 + 9462996-9463454 29 2.6
01_06_1288 - 36007432-36007851 29 2.6
01_01_0366 + 2871188-2871655 29 2.6
01_01_0364 - 2856598-2857059 29 2.6
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 29 2.6
01_01_0360 - 2837046-2837507 29 2.6
01_01_0358 - 2819235-2819696 29 2.6
01_01_0331 + 2685802-2686263 29 2.6
01_01_0329 + 2673479-2673940 29 2.6
05_05_0111 + 22479971-22480093,22480238-22480471 28 3.5
01_05_0011 + 17133501-17133738,17135335-17135607,17145224-171453... 28 3.5
11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553... 27 8.1
01_01_0029 + 215212-215769,215884-216345 27 8.1
>08_02_1090 + 24254172-24254624
Length = 150
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 392 EQVYPDKDFSLKLKRVINMFLNDEIEK 472
+QV+PD S K ++N F+ND EK
Sbjct: 72 KQVHPDIGISSKAMSIMNSFINDIFEK 98
>05_07_0203 + 28391707-28392165
Length = 152
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 392 EQVYPDKDFSLKLKRVINMFLNDEIEK 472
+QV+PD S K ++N F+ND EK
Sbjct: 74 KQVHPDIGISSKAMSIMNSFINDIFEK 100
>03_02_0560 + 9462996-9463454
Length = 152
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 392 EQVYPDKDFSLKLKRVINMFLNDEIEK 472
+QV+PD S K ++N F+ND EK
Sbjct: 74 KQVHPDIGISSKAMSIMNSFINDIFEK 100
>01_06_1288 - 36007432-36007851
Length = 139
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 392 EQVYPDKDFSLKLKRVINMFLNDEIEK 472
+QV+PD S K ++N F+ND EK
Sbjct: 61 KQVHPDIGISSKAMSIMNSFINDIFEK 87
>01_01_0366 + 2871188-2871655
Length = 155
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 392 EQVYPDKDFSLKLKRVINMFLNDEIEK 472
+QV+PD S K ++N F+ND EK
Sbjct: 77 KQVHPDIGISSKAMSIMNSFINDIFEK 103
>01_01_0364 - 2856598-2857059
Length = 153
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 392 EQVYPDKDFSLKLKRVINMFLNDEIEK 472
+QV+PD S K ++N F+ND EK
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFEK 101
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 392 EQVYPDKDFSLKLKRVINMFLNDEIEK 472
+QV+PD S K ++N F+ND EK
Sbjct: 612 KQVHPDIGISSKAMSIMNSFINDIFEK 638
>01_01_0360 - 2837046-2837507
Length = 153
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 392 EQVYPDKDFSLKLKRVINMFLNDEIEK 472
+QV+PD S K ++N F+ND EK
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFEK 101
>01_01_0358 - 2819235-2819696
Length = 153
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 392 EQVYPDKDFSLKLKRVINMFLNDEIEK 472
+QV+PD S K ++N F+ND EK
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFEK 101
>01_01_0331 + 2685802-2686263
Length = 153
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 392 EQVYPDKDFSLKLKRVINMFLNDEIEK 472
+QV+PD S K ++N F+ND EK
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFEK 101
>01_01_0329 + 2673479-2673940
Length = 153
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 392 EQVYPDKDFSLKLKRVINMFLNDEIEK 472
+QV+PD S K ++N F+ND EK
Sbjct: 75 KQVHPDIGISSKAMSIMNSFINDIFEK 101
>05_05_0111 + 22479971-22480093,22480238-22480471
Length = 118
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 392 EQVYPDKDFSLKLKRVINMFLNDEIEK 472
E+V+PD S K ++N F+ND EK
Sbjct: 40 EKVHPDIGISSKAMSIMNSFVNDIFEK 66
>01_05_0011 +
17133501-17133738,17135335-17135607,17145224-17145348,
17145463-17145612,17145653-17145696,17145822-17146174,
17146280-17146602,17147010-17147105
Length = 533
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -1
Query: 315 KKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTLLAL*LGMSSTLDSVFL 148
KK + L +L + ++ L+F F + A SIS FF ++L L L V L
Sbjct: 99 KKSNLFLQVLIDFIHFALALIFNFGLEGEASSISFFFNLYMSLVLIFPKRLAGVIL 154
>11_01_0678 -
5534879-5534883,5535430-5535529,5535638-5535799,
5536000-5536966,5537444-5537561,5538682-5538871,
5538952-5539107,5539296-5540315
Length = 905
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 183 VIKLRASEKNWKSSKRLMRF 242
V++L A ++ WKSSKR +F
Sbjct: 49 VLRLDADKERWKSSKRFKKF 68
>01_01_0029 + 215212-215769,215884-216345
Length = 339
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 380 DWLCEQVYPDKDFSLKLKRVINMFLNDEIEK*QNLQ 487
+W+ ++Y K+ + +L+ I+M ++D+ + NLQ
Sbjct: 189 EWVLCRIYKKKEANQQLQHYIDMMMDDDNDDEHNLQ 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,586,563
Number of Sequences: 37544
Number of extensions: 177029
Number of successful extensions: 378
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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