Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15c23
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    81   7e-17
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa...    29   0.52 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   0.92 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   1.2  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   2.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   3.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.9  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 81.4 bits (192), Expect = 7e-17
 Identities = 52/161 (32%), Positives = 89/161 (55%), Gaps = 13/161 (8%)
 Frame = +3

Query: 51  PENEAT-IQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPK- 224
           PE E+  I+ V+ + L VM I+KHC + S  NM    G L+G+ ++  L++++ F  P  
Sbjct: 10  PELESPPIERVELESLLVMNIIKHCRD-SFPNMGTI-GQLVGIDIDGVLQVSSSFESPSV 67

Query: 225 ---HDDTMDE-------EEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSL-LESQY 371
               +  +++       + +   M+ RL+ +     HVGWY  A V +FLS    +E+QY
Sbjct: 68  LENEESAVNKSVSGKARQAHTEAMLNRLQYIGAVTGHVGWYLGAYVSSFLSSPFFVETQY 127

Query: 372 HYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYXE 494
            YQ +   S+  +YD  +S+ G L ++AY+LTP+ +A + E
Sbjct: 128 AYQKANPNSIAFLYDLSQSSNGTLYMRAYQLTPEFMAAHEE 168


>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
           exchanger|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 412

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +3

Query: 177 VVENRLEITNCFPFPKHD----DTMDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFL 344
           + +NRLE  N F FP  D      +   EY   M R+L  +NV    VG  +S  + ++ 
Sbjct: 7   IAKNRLEAMNSFNFPAQDRHERAPLLGSEYDHSMARQLSLLNV----VGMTKSVLMSSYF 62

Query: 345 SLSLL 359
           +L L+
Sbjct: 63  NLMLV 67


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 266  HVQLVFLLIHGVVMLWKWEAVGNLQTVLND 177
            +++ VFL IH ++  W+WE V  +  ++ D
Sbjct: 969  YLRTVFLRIHFLISEWRWEDVAQILFLIFD 998


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 180 RPNQGELPEPPPCCCMILHDSVSLFSSLPVHRTEHIGSS 64
           R N  +LP  PP    ++ +++ LF+S+  H+   +  S
Sbjct: 768 RSNSAKLPYVPPSLTSLIDNAIQLFASMFCHQPPKVMES 806


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 144 MEVAQGALLGLVVENRLEITNCFPFPKHDDTMDEEEYQLDMMRRLRRVNV 293
           M+  +  L GLV +    +T  +  P H +  +  +++LD  R  RR+N+
Sbjct: 355 MDTTEELLSGLVKD----LTGSYKVPYHPEGPEGPKWELDFSRPWRRINM 400


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 204  W*SPDGSQRPNQGELPEPPP 145
            W + DGS   NQ   P PPP
Sbjct: 1868 WVNDDGSDLSNQAAPPPPPP 1887


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 504  CNRLPCT*Q*PEV---SNDRPSKSRILWLISL 418
            CN + C  Q   +   SN +P  +R+LWL+S+
Sbjct: 2947 CNAVSCFLQASSLLSSSNSKPLLTRVLWLLSV 2978


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,712
Number of Sequences: 5004
Number of extensions: 45514
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)