Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15c23
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 129 1e-30
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 32 0.30
10_01_0269 - 2865731-2865752,2866627-2868605 30 1.2
07_01_0662 + 4972953-4973645,4973758-4974046,4974790-4974803,497... 29 1.6
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 29 2.8
02_03_0085 + 15063444-15063889,15064324-15065311 29 2.8
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 28 3.7
05_01_0240 - 1791138-1791470 28 4.9
02_05_0996 - 33380363-33380597,33380767-33380851,33381206-333815... 28 4.9
06_01_0416 + 2965761-2965809,2965995-2966172,2966256-2966327,296... 27 6.5
03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058 27 6.5
12_01_0708 - 6137865-6140909 27 8.6
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 27 8.6
07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470 27 8.6
05_01_0126 + 858259-858489,858641-859189,859545-860162 27 8.6
03_05_0219 - 22059388-22059729,22059838-22059999 27 8.6
02_05_0557 + 29946273-29946497,29946899-29947465,29947898-299479... 27 8.6
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 129 bits (312), Expect = 1e-30
Identities = 67/149 (44%), Positives = 96/149 (64%), Gaps = 4/149 (2%)
Frame = +3
Query: 54 ENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDD 233
E + ++ VQ +GLAV+KI+KHC E + + + G LLGL V + LE+TNCFPFP +D
Sbjct: 27 EAPSPLRVVQMEGLAVLKIIKHCEEFAPA---LVTGQLLGLDVGSVLEVTNCFPFPMRED 83
Query: 234 T----MDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEESV 401
D YQL+MMR LR VNVD+ VGWYQS +G+F ++ L+E+ +YQ +I V
Sbjct: 84 DEEADADGANYQLEMMRCLREVNVDNNTVGWYQSCLLGSFQTVELIETFMNYQENIRRCV 143
Query: 402 VVIYDTKKSARGFLTLKAYRLTPQAIAMY 488
++YD +S +G L LKA +LT + +Y
Sbjct: 144 CIVYDPSRSNQGVLALKALKLTDSFMDLY 172
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 66 TIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDE 245
T++ V L ++ IV H + + + G LLG +++TN + P +D D
Sbjct: 13 TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDP 72
Query: 246 EEYQLD 263
+ LD
Sbjct: 73 RIWFLD 78
>10_01_0269 - 2865731-2865752,2866627-2868605
Length = 666
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -1
Query: 330 HLHSGTIQHENDQH*LFEASSSCPTGIPPHPWCRHALEMGSSW*SPDGSQRPNQGELPEP 151
HL SGTIQ E+ ++ + +SS P H H++ + + G R EP
Sbjct: 294 HLASGTIQ-EHSRYSVGSSSSKNSAAAPQHMTSLHSVVLAKTLSMRHGGDRGTSSSTDEP 352
Query: 150 P 148
P
Sbjct: 353 P 353
>07_01_0662 +
4972953-4973645,4973758-4974046,4974790-4974803,
4974848-4974856
Length = 334
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 195 PDGSQRPNQGELPEPPPCCCMILHDSVSLFSSLPVHRTEHIGSSLHF 55
P G P QG + PPP + +S F SLP+H+ + G ++H+
Sbjct: 207 PPGYIEPPQGYIEPPPPEPTLARIESTESF-SLPLHKVD--GRAIHY 250
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 306 VGWYQSADVGNFLSLSLLESQYH--YQTSIEESVVVIYDTKKSARGFLTLKAYR 461
VGWY+S + G + S +S +H ++ +++V D KSA G T+ A+R
Sbjct: 166 VGWYRS-NPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKSATGNFTMNAFR 218
>02_03_0085 + 15063444-15063889,15064324-15065311
Length = 477
Score = 28.7 bits (61), Expect = 2.8
Identities = 24/75 (32%), Positives = 33/75 (44%)
Frame = -1
Query: 276 ASSSCPTGIPPHPWCRHALEMGSSW*SPDGSQRPNQGELPEPPPCCCMILHDSVSLFSSL 97
+SS PT P H W R G P S G E C +I+ +V+L +L
Sbjct: 31 SSSRLPTTTPLHHWPRRRRSRGLP-PPPPPSPHSTAGPAGE---FCKIIIVPTVAL--AL 84
Query: 96 PVHRTEHIGSSLHFQ 52
P HR H G+++ Q
Sbjct: 85 PSHRIAHHGTAIEQQ 99
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 146 GGGSGSSPWFGR*EPSGDYQLLP 214
GGG GS WF R SG LLP
Sbjct: 47 GGGGGSGGWFSRLVASGASLLLP 69
>05_01_0240 - 1791138-1791470
Length = 110
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Frame = +1
Query: 124 MKNHA-ATWRW-----LRELSLVWSLRTVWRL 201
M+ HA WRW LR L W R VWRL
Sbjct: 24 MQQHADGQWRWRPGLCLRRFRLRWLRRAVWRL 55
>02_05_0996 -
33380363-33380597,33380767-33380851,33381206-33381557,
33381690-33382340
Length = 440
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 124 MKNHAATWRWLRELSLVWSLRTVWRLPTASHFQSMTTPWMRRNTS 258
M N + TWR +++ V +WR+ S PW+ R S
Sbjct: 9 MSNVSYTWRSIQKGLTVLQNGMIWRVGNGSKINIWADPWIPRGWS 53
>06_01_0416 +
2965761-2965809,2965995-2966172,2966256-2966327,
2966849-2967137,2967941-2968081,2969011-2969115,
2969354-2969501,2970023-2970075,2970189-2970266,
2970361-2970480,2970779-2970943,2971663-2971797,
2972063-2972182
Length = 550
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 159 PEPPPCCCMILHDSVSLFSSLPVHRT 82
P P C ++ HD S S LP RT
Sbjct: 99 PSHPDCKLVVSHDDYSFMSKLPSERT 124
>03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058
Length = 339
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -1
Query: 159 PEPPPCCCMILHDSVSLFSSLPVHRTEHIG----SSLHFQE 49
P+PPP M H +SLFS R+ +G ++ HFQE
Sbjct: 168 PQPPPPFPMHQHYPLSLFSPPTTPRSPPVGAAAAAAYHFQE 208
>12_01_0708 - 6137865-6140909
Length = 1014
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -1
Query: 171 QGELPEPPPCCCMILHDSVSLFSSLPVHRTEHIGSSLHFQ 52
+G +P P M+ + S + FSS+P+H + ++G + F+
Sbjct: 597 EGPIPVPQEGSTMLDYSS-NQFSSMPLHYSTYLGETFTFK 635
>11_06_0388 +
23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 131 IMQQHGGGSGSSPWFGR 181
+ QQ GGG SSPW+ R
Sbjct: 34 VQQQDGGGFKSSPWYVR 50
>07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470
Length = 445
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = -2
Query: 314 PSNMKMINIDSSKPPHHVQLVFLLIHGVVMLWKWE 210
P++ +++ S KP + L ++L G + L +W+
Sbjct: 339 PASTSKLDVHSQKPNQSMTLAYVLFRGSMKLLQWD 373
>05_01_0126 + 858259-858489,858641-859189,859545-860162
Length = 465
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 228 HALEMGSSW*SPDGSQRPNQGELPEPPPCC 139
H+ S S QR ++ + P PPPCC
Sbjct: 280 HSRSRSSEGSSSGQHQRQSRWDQPPPPPCC 309
>03_05_0219 - 22059388-22059729,22059838-22059999
Length = 167
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 384 RSDSDIVTLITKGLENCLHLHSG 316
R+ D+V L+ + LENC H ++G
Sbjct: 45 RAALDVVELVVRELENCPHYNAG 67
>02_05_0557 +
29946273-29946497,29946899-29947465,29947898-29947961,
29948400-29948480,29948604-29948818,29948936-29949106
Length = 440
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = -1
Query: 348 GLENCLHLHSGTIQHENDQH*LFEASSSCPTG 253
G NC L G D H LF+ SSCP G
Sbjct: 8 GQRNCQQLGGGVFG--GDAHHLFDEISSCPRG 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,623,483
Number of Sequences: 37544
Number of extensions: 339817
Number of successful extensions: 1015
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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