Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15c23
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...   101   2e-22
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    41   6e-04
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    29   1.9  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    29   1.9  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    29   1.9  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z83231-5|CAB05753.1|  239|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z48055-8|CAA88133.2|  379|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AL023847-9|CAA19553.1|  239|Caenorhabditis elegans Hypothetical ...    28   4.4  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       27   5.8  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    27   5.8  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    27   5.8  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    27   5.8  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    27   5.8  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    27   5.8  

>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score =  101 bits (243), Expect = 2e-22
 Identities = 61/165 (36%), Positives = 98/165 (59%), Gaps = 19/165 (11%)
 Frame = +3

Query: 66  TIQYVQCDGLAVMKIVKHCHEESCSNM-----EVAQGALLGLVV--ENRLEITNCFPFPK 224
           +++++  D L VMKIVKH   E  + +     +   G L GLV   ++RLEITNCFP  +
Sbjct: 11  SVKHILLDSLVVMKIVKHVDSELHAGISEVSGDACAGVLTGLVFLEDSRLEITNCFPTVR 70

Query: 225 HDDTMDEE-----EYQ-------LDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSLLESQ 368
           ++  MD++     +Y+       LDM+R+ R +N+D+  VG+YQS   G   S  L+ES 
Sbjct: 71  NEPVMDDDANAAQQYEEQKQHEMLDMLRKFRTMNIDYEIVGFYQSHQFGAGFSHDLVESM 130

Query: 369 YHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYXEGDY 503
           + YQ    E+VV+IYD  K+ +G L+L+A+RL+  A+ +  + D+
Sbjct: 131 FDYQAMGPENVVLIYDPIKTRQGQLSLRAWRLSTAALDLASKNDW 175


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
 Frame = +3

Query: 138 SNMEVAQGALLGLVVENRLEITNCFPFP---KHDDTMDEEEYQLDMMRRLRRVNVDHFHV 308
           +  E   G L+G   +  +++TNCF  P    +DD   ++++   M+  L++ + +   V
Sbjct: 32  TGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQPV 91

Query: 309 GWYQSADVGNFLSLSLLESQYHYQTSIEES 398
           GW+ +    +  S  L+   Y+ +   E S
Sbjct: 92  GWFLT--TSDITSSCLIYHDYYVRVITEAS 119


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform a
           protein.
          Length = 2322

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 296 INIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL-SHLH 144
           I  DS      V+L   +IH  V+ W  E V    T+L+  TK S L S +H
Sbjct: 582 IGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKWSELTSDIH 633


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform b
           protein.
          Length = 2019

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 296 INIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL-SHLH 144
           I  DS      V+L   +IH  V+ W  E V    T+L+  TK S L S +H
Sbjct: 582 IGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKWSELTSDIH 633


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
           nonsense-mediated mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 296 INIDSSKPPHHVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSL-SHLH 144
           I  DS      V+L   +IH  V+ W  E V    T+L+  TK S L S +H
Sbjct: 582 IGSDSFSQREWVRLRNTVIHQSVLTWNNECVNQALTILSTATKWSELTSDIH 633


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
 Frame = +3

Query: 81   QCDGLAVMKIVKHCHEESCS------NME-VAQ--GALLGLVVENRLEITNCFPF 218
            QCD  AV+K +K   EE CS      N+E +A+  G    +V ++ +++TNC  F
Sbjct: 3521 QCDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGITADIVEQSVIQLTNCLGF 3575


>Z83231-5|CAB05753.1|  239|Caenorhabditis elegans Hypothetical
           protein Y57A10C.1 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 266 HVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHLHVAA*FFMTVFHYFHHC 96
           H   V+LL    + +  W  V  +Q      T+ S+L    ++A FF+   +Y++ C
Sbjct: 110 HCPPVYLLC--CISIEVWHLVSPIQYTFPKTTRLSNLQKFKISAFFFILETYYYYTC 164


>Z48055-8|CAA88133.2|  379|Caenorhabditis elegans Hypothetical
           protein T07A5.1 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = +3

Query: 54  ENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDD 233
           EN+ +  Y+Q D      ++K+ +  S  N+ +     L L +  R EI  C     H +
Sbjct: 113 ENKTSNDYLQFDTQPARAVLKNFNTFSIGNLHIPSNIPLFLKMWERSEIRGCLNLIVHRN 172

Query: 234 TMDEEEY 254
               +++
Sbjct: 173 MTKSQQF 179


>AL023847-9|CAA19553.1|  239|Caenorhabditis elegans Hypothetical
           protein Y57A10C.1 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 266 HVQLVFLLIHGVVMLWKWEAVGNLQTVLNDQTKESSLSHLHVAA*FFMTVFHYFHHC 96
           H   V+LL    + +  W  V  +Q      T+ S+L    ++A FF+   +Y++ C
Sbjct: 110 HCPPVYLLC--CISIEVWHLVSPIQYTFPKTTRLSNLQKFKISAFFFILETYYYYTC 164


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 48  APENEATIQYVQCD 89
           APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
           protein 89, isoform e protein.
          Length = 5992

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 48  APENEATIQYVQCD 89
           APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
           protein 89, isoform a protein.
          Length = 6632

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 48  APENEATIQYVQCD 89
           APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
           protein 89, isoform g protein.
          Length = 7122

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 48  APENEATIQYVQCD 89
           APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
           protein 89, isoform f protein.
          Length = 7441

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 48  APENEATIQYVQCD 89
           APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
           protein 89, isoform b protein.
          Length = 8081

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +3

Query: 48  APENEATIQYVQCD 89
           APE +ATI+YV+CD
Sbjct: 747 APEFQATIEYVECD 760


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,089,361
Number of Sequences: 27780
Number of extensions: 274305
Number of successful extensions: 737
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)