Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15c21
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.40 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 61  GHWQQHVANTKKPPQQTAGKPFGANANGGRRHVANHQHHGLS 186
           GHWQ        PP+QT   P     +G RR     +++ +S
Sbjct: 383 GHWQMSCVACSPPPRQT---PPSRKESGRRRRRRTPRYNSVS 421


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 167 INTTASQTAASLLINDITPNKTESLKIL 250
           IN   SQT   LLI++I P+ + +L +L
Sbjct: 271 INILLSQTMFFLLISEIIPSTSLALPLL 298


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 340 VDRFDSIQLNFGLVGLHRFQQIARSDRLSRQN 245
           +DR D++     +  + R  +I R DR+ R N
Sbjct: 498 MDRMDTMDRTDKMSRIDRMDKIDRMDRMDRTN 529



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 367 VNAPQKV*HVDRFDSIQLNFGLVGLHRFQQIARSDRLSR 251
           VN   ++  +DR D +     +  + R  ++ R DR+ R
Sbjct: 381 VNRMDRMDRIDRMDRMDRMDTMDTMDRIDRMDRMDRIDR 419


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 230 TESLKILSTQSVGARNLLEPMQ 295
           TESL+++ T +  AR L EP++
Sbjct: 386 TESLRLIPTTTCIARILDEPIE 407


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 292 HRFQQIARSDRLSRQN 245
           +RFQ+IA S + +R+N
Sbjct: 316 NRFQKIAESMKTAREN 331


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 292 HRFQQIARSDRLSRQN 245
           +RFQ+IA S + +R+N
Sbjct: 316 NRFQKIAESMKTAREN 331


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 333 VSILFNLILVSLACIGSN 280
           V +LF ++L    C+GS+
Sbjct: 568 VVVLFAVVLAGATCLGSS 585


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 292 HRFQQIARSDRLSRQN 245
           +RFQ+IA S + +R+N
Sbjct: 255 NRFQKIAESMKTAREN 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,899
Number of Sequences: 438
Number of extensions: 2950
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)