Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15c18
         (127 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   5.5  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    18   9.6  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    18   9.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 116 QDFENLFSY 90
           QD EN+F Y
Sbjct: 656 QDIENIFKY 664


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 85  DEIYDLFVKINLPFL*CLP 29
           D  Y    K+N+PF   LP
Sbjct: 54  DNTYTKTFKMNVPFEETLP 72


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 85  DEIYDLFVKINLPFL*CLP 29
           D  Y    K+N+PF   LP
Sbjct: 56  DNTYTKTFKMNVPFEETLP 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,146
Number of Sequences: 438
Number of extensions: 624
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 22
effective length of database: 136,707
effective search space used:  2597433
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)