Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15c14
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   219   3e-58
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   218   3e-58
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    29   0.30 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   2.8  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   3.7  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    25   6.5  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   8.5  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  219 bits (534), Expect = 3e-58
 Identities = 95/123 (77%), Positives = 111/123 (90%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           DRPGSK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 388 NWY 396
           NW+
Sbjct: 121 NWF 123


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  218 bits (533), Expect = 3e-58
 Identities = 94/123 (76%), Positives = 111/123 (90%)
 Frame = +1

Query: 28  MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
           MSH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ 
Sbjct: 1   MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDL 60

Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
           DRPGSK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYK
Sbjct: 61  DRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYK 120

Query: 388 NWY 396
           NW+
Sbjct: 121 NWF 123


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = +2

Query: 302 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLDANQ*KKDFK 481
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+      D++
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLNTVFTTNDWE 278

Query: 482 KMIRY 496
           K I Y
Sbjct: 279 KNIIY 283


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -2

Query: 492  RIIFLKSFFY*FASKLILPFLTGFSESLLLAFVPVFVEATST 367
            +++ +++    F SKL L  +  F E + LAF+  F+E TS+
Sbjct: 1021 KLLTIRAVLSCFFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 204 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 40
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 489 IIFLKSFFY*FASKLILPFLTGFSESLLL 403
           I+FL    Y +   + L F  GF+ES LL
Sbjct: 180 IVFLHCCAYNYGGLIALRFFLGFTESCLL 208


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 219 FKNQQERDRGGCHHHRDSSDGLC 287
           F +    D G  HHH  S+  +C
Sbjct: 471 FNHGHNHDHGSHHHHSHSNHSMC 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,681
Number of Sequences: 5004
Number of extensions: 44484
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)