Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15c13
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 31 0.62
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55... 30 0.82
12_01_0730 + 6505759-6508806 29 1.4
12_01_0714 + 6223269-6226250 29 2.5
09_04_0607 - 18918624-18918710,18918918-18919034,18919652-189200... 29 2.5
03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270 29 2.5
03_05_0613 + 26124714-26124857,26125692-26126330,26126455-261266... 28 4.4
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550... 28 4.4
01_03_0231 + 14014243-14014390,14015053-14015141,14017859-140179... 27 7.6
>03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 30.7 bits (66), Expect = 0.62
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -3
Query: 367 FCFVSLFTIAAGKLPNTKRLLHTWKLKQVFSSFNGSKLPSSLKTLIIVFNTSCVKI 200
FC T + K P+ +HTWKLK FS K S LK L V ++S + +
Sbjct: 1072 FCSNGSITNSQSKQPDEIYTVHTWKLKW-FSEETVVKFISLLKALYSVSSSSSLPV 1126
>08_01_0077 +
546473-546512,546739-547013,547772-547885,548002-550245
Length = 890
Score = 30.3 bits (65), Expect = 0.82
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 51 IKYAIDPTNKIVIEQVDNVDAFVHILEPG 137
+ +I+ NKI I D VD +H+LE G
Sbjct: 621 LNLSINDNNKIAIANADAVDPLIHVLETG 649
>12_01_0730 + 6505759-6508806
Length = 1015
Score = 29.5 bits (63), Expect = 1.4
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +3
Query: 159 LSRYHQFPGVVSSIIFTQLVLNTIISVLSE--DGSLLPLKLENTCFNFHVCNKRFVFGNL 332
LSR ++F G IIF L TI + G+L + + N + N F G +
Sbjct: 297 LSR-NKFQGSFPPIIFQHKKLRTINLSKNPGISGNLPNFSQDTSLENLFLNNTNFT-GTI 354
Query: 333 PAAIVNNETKQKLRIGSPIFAG 398
P +I+N + +KL +G+ F+G
Sbjct: 355 PGSIINLISVKKLDLGASGFSG 376
>12_01_0714 + 6223269-6226250
Length = 993
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 171 HQFPGVVSSIIFTQLVLNTIISVLSE--DGSLLPLKLENTCFNFHVCNKRFVFGNLPAAI 344
++F G IIF L TI + G+L + + N + N F G +P +I
Sbjct: 278 NKFQGSFPPIIFQHKKLRTINLSKNPGISGNLPNFSQDTSLENLFLNNTNFT-GTIPGSI 336
Query: 345 VNNETKQKLRIGSPIFAG 398
+N + +KL +G+ F+G
Sbjct: 337 INLISVKKLDLGASGFSG 354
>09_04_0607 -
18918624-18918710,18918918-18919034,18919652-18920030,
18921220-18921359
Length = 240
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 81 IVIEQVDNVDAFVHILEPGQEVFDETLSRYHQFPGVVSSIIF 206
I+++ + + F +E E+F+ +LS Q+PGV + + F
Sbjct: 179 ILLDDLSLANQFQTFIERIDEIFEVSLSTNQQYPGVYALLFF 220
>03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270
Length = 121
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -3
Query: 175 WWYRLSVSSNTS*PGSRICTNASTLSTCSITILFVGSIAYLILY 44
WW+ + S+ S P + + S + LFVG++A ++++
Sbjct: 78 WWWSIGASAVDSQPWRSVTLSGSRSGASLLLGLFVGNVAIILIW 121
>03_05_0613 +
26124714-26124857,26125692-26126330,26126455-26126695,
26126913-26127496
Length = 535
Score = 27.9 bits (59), Expect = 4.4
Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Frame = +3
Query: 9 SYTLNRTDVMELYNIKYAIDPTNKIVIEQVDNVDAFVHILEPGQEVFDE-----TLSRYH 173
SYT ++ EL K +P + +E+ + + ++L+ V + +H
Sbjct: 419 SYTYEDDNMEELDQKKVECEPNKEAALEKFEWISDDENVLDNEDRVTGAYHGYIDIIGFH 478
Query: 174 QFPGVV--SSIIFTQLVLNTIISVLSEDGSLLPLKLENTCFNFHVCNKRFVFGNLP 335
+ ++ S + L + S + + G+L P T +N H+ N+RF+ + P
Sbjct: 479 PYKEIIFLSESLKRGLAYHLSSSKVEDIGNLYP-----TSYNIHLINERFITASFP 529
>03_02_0081 -
5506194-5506197,5506310-5507170,5507299-5507456,
5507549-5507740
Length = 404
Score = 27.9 bits (59), Expect = 4.4
Identities = 9/39 (23%), Positives = 22/39 (56%)
Frame = +3
Query: 138 QEVFDETLSRYHQFPGVVSSIIFTQLVLNTIISVLSEDG 254
+ ++D + FP + +++ QL + T ++V+ +DG
Sbjct: 197 ERLYDGRFAHVEFFPADIGAVLGNQLSIGTFLAVIDDDG 235
>01_03_0231 +
14014243-14014390,14015053-14015141,14017859-14017949,
14018088-14018215,14018703-14018784,14019022-14019081,
14019160-14019251,14019342-14019462,14019873-14019928,
14020193-14020272,14020774-14020820,14020940-14020989,
14021304-14021366,14021515-14021595,14021703-14021717,
14021875-14021985,14022072-14022147,14022350-14022492,
14022721-14022794,14023364-14023454,14023589-14023687
Length = 598
Score = 27.1 bits (57), Expect = 7.6
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3
Query: 99 DNVDAFVHILEPGQEVFDETLSR 167
DN+ H+L+ G E++D T+++
Sbjct: 141 DNIKTAYHVLQVGDEIYDATMNQ 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,637,463
Number of Sequences: 37544
Number of extensions: 244432
Number of successful extensions: 784
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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