Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15c13
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81122-5|CAB03357.1|  579|Caenorhabditis elegans Hypothetical pr...    28   2.9  
U28943-8|AAK68293.1|  325|Caenorhabditis elegans Serpentine rece...    27   5.1  
AL021482-1|CAA16338.1|  385|Caenorhabditis elegans Hypothetical ...    27   6.8  
AF040657-6|AAB95051.2|  261|Caenorhabditis elegans Hypothetical ...    27   6.8  
Z75953-1|CAB00098.1|  400|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U39851-5|AAZ32802.1|  408|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U39851-4|AAZ32803.1|  572|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U39851-3|AAZ32804.1|  563|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U11245-1|AAA96833.1|  198|Caenorhabditis elegans cysteine protea...    27   9.0  
L22447-1|AAB00354.1|  133|Caenorhabditis elegans cysteine protea...    27   9.0  

>Z81122-5|CAB03357.1|  579|Caenorhabditis elegans Hypothetical
           protein T13F2.6 protein.
          Length = 579

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 268 NGSKLPSSLKTLIIVFNTSCVKIIELTTPGNWWYRLSV 155
           NGS    S K  I V +  C+ ++   TPGN W +L +
Sbjct: 69  NGSFSFDSSKKQIHVKSVKCIYMLPKATPGNKWAQLKL 106


>U28943-8|AAK68293.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 58 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -3

Query: 259 KLPSSLKTL-IIVFNTSCVKIIELTTPGNWWYRLSVSSNTS 140
           K P++L  L I ++NTSCV+I  +T      +RL  +SN++
Sbjct: 37  KSPATLDGLKIFLYNTSCVQIALITFAFLSQHRLLTNSNSA 77


>AL021482-1|CAA16338.1|  385|Caenorhabditis elegans Hypothetical
           protein Y39A1B.1 protein.
          Length = 385

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 280 FSSFNGSKLPSSLKTLIIVFNTSC 209
           F++FNG+ + S LKT +I  N  C
Sbjct: 214 FTNFNGNNVVSELKTTMIQVNCYC 237


>AF040657-6|AAB95051.2|  261|Caenorhabditis elegans Hypothetical
           protein T20H9.2 protein.
          Length = 261

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -2

Query: 146 HFLTRF*DMHKCVHIVDLLYYNFICWIDCIFNIIQFHNVRSIQRIA 9
           HF T    + +C HI ++   +F  W + +  ++   +  ++Q IA
Sbjct: 55  HFTTELAKLEECFHIKEICLISF--WEEYVLRMLSLFDATTLQSIA 98


>Z75953-1|CAB00098.1|  400|Caenorhabditis elegans Hypothetical
           protein F57F5.1 protein.
          Length = 400

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 256 VCCR*NSKTLVLISTCAINALCLAIC 333
           +C   N+KT++ IS   INA C  +C
Sbjct: 187 ICIASNAKTILSISADDINACCGMVC 212


>U39851-5|AAZ32802.1|  408|Caenorhabditis elegans Hypothetical
           protein C23G10.7a protein.
          Length = 408

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/44 (22%), Positives = 27/44 (61%)
 Frame = +3

Query: 96  VDNVDAFVHILEPGQEVFDETLSRYHQFPGVVSSIIFTQLVLNT 227
           V+ +  +  +++P +  FD+ +S + ++P  +S+ I T + ++T
Sbjct: 11  VEQIAEYEEVIDP-KAFFDKIISLWKEYPNAISNRITTSVSVDT 53


>U39851-4|AAZ32803.1|  572|Caenorhabditis elegans Hypothetical
           protein C23G10.7b protein.
          Length = 572

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/44 (22%), Positives = 27/44 (61%)
 Frame = +3

Query: 96  VDNVDAFVHILEPGQEVFDETLSRYHQFPGVVSSIIFTQLVLNT 227
           V+ +  +  +++P +  FD+ +S + ++P  +S+ I T + ++T
Sbjct: 11  VEQIAEYEEVIDP-KAFFDKIISLWKEYPNAISNRITTSVSVDT 53


>U39851-3|AAZ32804.1|  563|Caenorhabditis elegans Hypothetical
           protein C23G10.7c protein.
          Length = 563

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/44 (22%), Positives = 27/44 (61%)
 Frame = +3

Query: 96  VDNVDAFVHILEPGQEVFDETLSRYHQFPGVVSSIIFTQLVLNT 227
           V+ +  +  +++P +  FD+ +S + ++P  +S+ I T + ++T
Sbjct: 11  VEQIAEYEEVIDP-KAFFDKIISLWKEYPNAISNRITTSVSVDT 53


>U11245-1|AAA96833.1|  198|Caenorhabditis elegans cysteine protease
           protein.
          Length = 198

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 256 VCCR*NSKTLVLISTCAINALCLAIC 333
           +C   N+KT++ IS   INA C  +C
Sbjct: 15  ICIASNAKTILSISADDINACCGMVC 40


>L22447-1|AAB00354.1|  133|Caenorhabditis elegans cysteine protease
           protein.
          Length = 133

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 256 VCCR*NSKTLVLISTCAINALCLAIC 333
           +C   N+KT++ IS   INA C  +C
Sbjct: 15  ICIASNAKTILSISADDINACCGMVC 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,254,597
Number of Sequences: 27780
Number of extensions: 231965
Number of successful extensions: 772
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)