Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15c11
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601... 35 0.048
08_01_0269 - 2172363-2172538,2172632-2172697,2172790-2172887,217... 30 1.4
01_01_1124 + 8916863-8917090,8917745-8917936,8918115-8918280,891... 30 1.4
06_01_0889 - 6807449-6809257 29 3.2
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 29 3.2
07_01_0516 - 3850252-3852870 28 4.2
11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335 28 5.5
09_01_0161 + 2401945-2402218,2402469-2402563,2402936-2403070,240... 27 7.3
08_02_1150 + 24709071-24710774 27 9.7
06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141 27 9.7
04_04_0935 - 29509135-29511732 27 9.7
04_01_0618 - 8094991-8097288 27 9.7
>11_01_0727 -
6010537-6010548,6011029-6011606,6011709-6011774,
6011867-6011964,6013238-6013608
Length = 374
Score = 34.7 bits (76), Expect = 0.048
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 118 FPTPAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVK 282
FP P + + + Y++ LA+ + K +++A+ST TY G + +MS K
Sbjct: 100 FPDPKPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGFQAVMTEEMSEK 154
>08_01_0269 -
2172363-2172538,2172632-2172697,2172790-2172887,
2173442-2173791
Length = 229
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 106 ILAVFPT-PAYSHHIVYKVYIEALAEKCHNVTVVKPKLFAYSTKTYCGNITEVNSDMSVK 282
I+ FP PA + + Y+ LA ++ K ++A+ST TY G V+ + S K
Sbjct: 88 IVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEETSEK 147
>01_01_1124 +
8916863-8917090,8917745-8917936,8918115-8918280,
8918373-8918794
Length = 335
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 420 AHVDIVKLVFEHFNQAQVVGGGYRVCIGHHSALSKHCR 307
A+ D V L F+HF Q+ V G G + K+CR
Sbjct: 291 AYADDVNLFFKHFAQSMVNMGNISPLTGSQGEIRKNCR 328
>06_01_0889 - 6807449-6809257
Length = 602
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 331 VVSDTDTVTAANYLGLIEMFKDQFDNINVRNLIA-NNQTFDLVVVEAFADYALVFGHL 501
VVS T V LGL++ ++ FD + RNL++ N+ V + F D VF +
Sbjct: 164 VVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEM 221
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -3
Query: 398 WSLNISIKPR*LAAVTVSVSDTTPRFLNIAEFVTSFLYCLTDMSELTSVILPQ*VLVEYA 219
W L +S P + + ++ +PRFL + VT + L M+ L +V LP LV
Sbjct: 217 WLLALSAVPSFVLLLFYVITPESPRFLCMKGRVTEAMDVLEKMARLNNVQLPSGRLVSDK 276
Query: 218 N 216
N
Sbjct: 277 N 277
>07_01_0516 - 3850252-3852870
Length = 872
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 325 RGVVSDTDTVTAANYLGLIEMFKDQFDNINVRNLIANN 438
+ V+S T + GL++M D FD + VRN + N
Sbjct: 317 KDVISWTGLLNGYMEFGLVDMAMDVFDRMPVRNFVTYN 354
>11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335
Length = 776
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 499 LYDPAPVIQIAPGYG 543
LY PAPV APGYG
Sbjct: 319 LYSPAPVCVCAPGYG 333
>09_01_0161 +
2401945-2402218,2402469-2402563,2402936-2403070,
2403176-2403865
Length = 397
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 170 PLPKNVTTLRSSSPNCLRIRP 232
PLP+N T +S P LR+RP
Sbjct: 159 PLPENPTLAQSKLPEFLRVRP 179
>08_02_1150 + 24709071-24710774
Length = 567
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 325 RGVVSDTDTVTAANYLGLIEMFKDQFDNINVRNLIANN 438
R VV+ VT GL+ + + FD + VRNL++ N
Sbjct: 224 RNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWN 261
>06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141
Length = 564
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3
Query: 489 VWPPVRSCARNP 524
VWPPVR CA +P
Sbjct: 308 VWPPVRQCAPSP 319
>04_04_0935 - 29509135-29511732
Length = 865
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 322 KRGVVSDTDTVTAANYLGLIEMFKDQFDNINVRNLIANN 438
+R +VS T +TA + +G I ++ FD + RN I N
Sbjct: 434 ERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWN 472
>04_01_0618 - 8094991-8097288
Length = 765
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 52 ILCWLALLSTLTAVNAVNILAVFPTPAYSHHIVYKVYI----EALAEKCHNVTVVK 207
I WL LLS L A A + A Y+ H + YI AL E +VT+ +
Sbjct: 366 IASWLRLLSILLATTAAGLYARSHKDMYNKHDITVTYILFFSTALLELISSVTLCR 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,380,786
Number of Sequences: 37544
Number of extensions: 316260
Number of successful extensions: 770
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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