Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15c10
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine d...    27   6.0  
AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    27   8.0  
AL032646-12|CAA21685.2|  411|Caenorhabditis elegans Hypothetical...    27   8.0  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      27   8.0  

>U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical
           protein C03G6.5 protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 216 IHLLNSVKKVRPLPSTIKLWLKYFENKKHN-ESISSRNNCASKHTFSKRSYVLNLKLYCN 40
           + L +  +KV  L    K  LK F+    +  S  S  NC +K    K  YV ++K YC+
Sbjct: 75  VRLSDFAEKVDNLDMNDKTKLKEFKRSCDSLHSCYSNLNCTTKSDDEKDKYVESIKQYCD 134


>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 490 LVEGAQRGRQVSAFALETLNFVCGLARLTHD 398
           +  G Q G+  SA   ET++FVC L    +D
Sbjct: 157 MTNGTQAGKWASASCTETMSFVCELPATIYD 187


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/80 (22%), Positives = 34/80 (42%)
 Frame = +2

Query: 32  AYRLQYSLRFNTYDRFENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNK 211
           AY+ + S+    +D FEN+ +      D++ S+   + K  +   +++    T   E   
Sbjct: 161 AYKRKKSVITEVFDEFENILWSVCSFSDKLTSIS-CYKKEMDPDCLIENVN-TLSNELEN 218

Query: 212 CIVSIKSSFENQANNTDNIH 271
               + + F     NTD IH
Sbjct: 219 -FEKVTAEFTKYLVNTDGIH 237


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
 Frame = -3

Query: 285 MFFTLCMLSVLLA*FSKLLFMETIHLLNSVKKVRPLPSTIK--LW--LKYFENKKHNESI 118
           +F+ + +++++     KL   E    LN+  K + + + IK   W  L  FEN  + E I
Sbjct: 8   IFYFIFVIAIIPIVTEKLSLKENKERLNTCGKDKDIYNGIKNNRWHILAAFENGNNIEYI 67

Query: 117 SSRNNCASKHTFSKRSYVLNLKL 49
           SS +  +++H  +    +LN ++
Sbjct: 68  SSASLISNRHFITSAFSILNSQM 90


>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 60  LTRTTASKTCVLKRNCYEMKSI--RCVF 137
           +TRTT  K C L  NC+    I  +CVF
Sbjct: 36  ITRTTPVKKCYLGENCFTKTPITQKCVF 63


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
            C38D4.3 protein.
          Length = 1784

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 77   FENVCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANN 256
            FEN  FEA  +  E  S   L S +    +  DG+G     +  +  +S+K  FE +  N
Sbjct: 891  FENEKFEA--MSSEAISSNKLLSAFLPGMIKKDGRGRQKTAKEQEIEISVKKMFERKVQN 948

Query: 257  TD 262
             D
Sbjct: 949  DD 950


>U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine dna
           alkyltransferaseprotein 2 protein.
          Length = 274

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 272 NVKNIFSIFLRDEFIKQVPQFRTIMQYLQTYYNPTPAPDVDEIMCQSCK 418
           NVK IF+  L+ + +  V     + Q  +++Y+      +DE++ Q  K
Sbjct: 50  NVKEIFNCILQTQPLPVVQPCHPVRQPRESFYSSHEHDPMDEVLLQEVK 98


>AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical
           protein W09B6.1b protein.
          Length = 813

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 306 TSSSNKCPNLGPLCNTCKHITIRRRHPT 389
           T  +++   +  +C+T KH+TIR   PT
Sbjct: 496 TRGTSRTEAMNTMCSTLKHMTIRSSFPT 523


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
           protein W09B6.1a protein.
          Length = 2054

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 306 TSSSNKCPNLGPLCNTCKHITIRRRHPT 389
           T  +++   +  +C+T KH+TIR   PT
Sbjct: 496 TRGTSRTEAMNTMCSTLKHMTIRSSFPT 523


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 353  LQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRY 460
            L T YNP    D   + C  C   + I   +C C Y
Sbjct: 2060 LPTSYNPDSHDDKLFVPCSGCTSGDVIIIHKCTCAY 2095


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 353  LQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRY 460
            L T YNP    D   + C  C   + I   +C C Y
Sbjct: 2060 LPTSYNPDSHDDKLFVPCSGCTSGDVIIIHKCTCAY 2095


>AL032646-12|CAA21685.2|  411|Caenorhabditis elegans Hypothetical
           protein Y54E2A.12 protein.
          Length = 411

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 41  LQYSLRFNTYDRFENVCFEAQLLRDEIDSL 130
           L  + RFN Y  F ++C    L+  E+D+L
Sbjct: 184 LSINPRFNYYQGFHDICLTVLLVCGEVDAL 213


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 353  LQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRY 460
            L T YNP    D   + C  C   + I   +C C Y
Sbjct: 2060 LPTSYNPDSHDDKLFVPCSGCTSGDVIIIHKCTCAY 2095


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,524,181
Number of Sequences: 27780
Number of extensions: 271180
Number of successful extensions: 939
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)