Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15c10
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   1.4  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    23   1.9  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    23   1.9  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    23   1.9  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    23   1.9  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    23   1.9  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    23   1.9  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    23   1.9  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    23   1.9  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   1.9  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   1.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   4.3  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    21   5.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 358 NILQSDAGTRRGRDHVSVVQARKQN 432
           +I+Q+D  TR   D V  ++A K+N
Sbjct: 333 DIIQNDRRTRHLSDRVVALEAEKKN 357


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 215 IVSIKSSFENQANNTDNIHNVKNIFSIFLRDEFIKQVP 328
           I+S  S+     NN  N +N  N   ++    +I+QVP
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYKKLYYNINYIEQVP 118


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 215 IVSIKSSFENQAN--NTDNIHNVKNIFSIFLRDEFIKQVP 328
           I+S  +S  N  N  N  N +N  N   ++    +I+Q+P
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP 120


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 215 IVSIKSSFENQAN--NTDNIHNVKNIFSIFLRDEFIKQVP 328
           I+S  +S  N  N  N  N +N  N   ++    +I+Q+P
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP 120


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 215 IVSIKSSFENQAN--NTDNIHNVKNIFSIFLRDEFIKQVP 328
           I+S  +S  N  N  N  N +N  N   ++    +I+Q+P
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP 120


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 215 IVSIKSSFENQAN--NTDNIHNVKNIFSIFLRDEFIKQVP 328
           I+S  +S  N  N  N  N +N  N   ++    +I+Q+P
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP 120


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 215 IVSIKSSFENQAN--NTDNIHNVKNIFSIFLRDEFIKQVP 328
           I+S  +S  N  N  N  N +N  N   ++    +I+Q+P
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP 120


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 215 IVSIKSSFENQAN--NTDNIHNVKNIFSIFLRDEFIKQVP 328
           I+S  +S  N  N  N  N +N  N   ++    +I+Q+P
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP 120


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 215 IVSIKSSFENQAN--NTDNIHNVKNIFSIFLRDEFIKQVP 328
           I+S  +S  N  N  N  N +N  N   ++    +I+Q+P
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP 120


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 215 IVSIKSSFENQAN--NTDNIHNVKNIFSIFLRDEFIKQVP 328
           I+S  +S  N  N  N  N +N  N   ++    +I+Q+P
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP 120


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 215 IVSIKSSFENQAN--NTDNIHNVKNIFSIFLRDEFIKQVP 328
           I+S  +S  N  N  N  N +N  N   ++    +I+Q+P
Sbjct: 314 IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP 353


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 215 IVSIKSSFENQAN--NTDNIHNVKNIFSIFLRDEFIKQVP 328
           I+S  +S  N  N  N  N +N  N   ++    +I+Q+P
Sbjct: 314 IISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIEQIP 353


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 452 CRYLASSLSTLDEGLQN 502
           C+ +ASS+S  +EGL N
Sbjct: 595 CKVIASSVSAGEEGLGN 611


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 327 PNLGPLCNTCKHI 365
           P+  P+CN CK +
Sbjct: 29  PSKEPICNICKRV 41


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 251 NNTDNIHNVKNIFSIFLRDEFIKQVP 328
           NN  N +N  N   ++    +I+Q+P
Sbjct: 95  NNNYNNYNKHNYNKLYYNINYIEQIP 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,436
Number of Sequences: 438
Number of extensions: 2917
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)