Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15c02
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 1.4
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 2.5
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 26 3.3
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 25 4.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 5.8
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 25 5.8
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 25 5.8
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 7.7
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.7
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 25 7.7
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.1 bits (57), Expect = 1.4
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -3
Query: 462 CCPNRNTTTCGNPPRQRFAFE-RDHFVVWQQKPFFKKRIHWRF 337
C P N T N A + D++ W+ FF HWRF
Sbjct: 22 CAPFNNLLTDWNLNTNVSALDPSDYWGEWENHEFFPSPEHWRF 64
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 2.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 41 RFKANGSVCALTTPSLNDMFSF*ASTQTSNTL--ALKSINFLN 163
R K N ++ + TP +D+ S+ T+NTL ++S NF N
Sbjct: 286 RKKENVNLNLVKTPKYDDLTKMNLSSSTANTLIKGIQSYNFQN 328
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 249 ARRQHVRHQAQY*TRIQNASVGPHVCA*QQTANVF 353
ARRQ R QA++ R + S+G + + Q ++N+F
Sbjct: 173 ARRQATRLQAKHLRRATSGSLGYNPYSLQNSSNIF 207
>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +1
Query: 64 LRLNDAIIKRHVLVLSEYADLKYLGFEKYKFFEYVIFQFCNDPHLCKIIENNY 222
+ L D + ++ + +Y + ++ K + + +F DP+L + IEN Y
Sbjct: 352 IHLGDRDVPNALMFIDKYRQVPHILAPLVKVLQQL--EFLRDPYLVQYIENEY 402
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 5.8
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 226 NCSCFL*SCTGAGRCKIEILHIQKIYT 146
NC C+L T + +E+ H+ K+++
Sbjct: 77 NCQCYLYHSTNSQLEPLEVFHLHKLHS 103
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 5.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 337 KPPMYSFLKEWFLLPHYKVV 396
K PM S + EW+LLP Y ++
Sbjct: 264 KTPM-SIVPEWYLLPFYAIL 282
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 334 NKPPMYSFLKEWFLLPHYKVVSLKSESLTWGISA 435
+KP YS+ KE L HYK + S T+ A
Sbjct: 208 SKPFKYSYEKEIVLYAHYKKLDYFSTECTYSPEA 241
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 24.6 bits (51), Expect = 7.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 31 MASSLQSKWICLRLNDAIIKRHV 99
+ +LQ C+RLNDA+I++ +
Sbjct: 429 LIQALQKLQTCMRLNDALIEQRL 451
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 24.6 bits (51), Expect = 7.7
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 342 RFVAKHTHVAQHWRFECAFNIVPDVAHVVGGRFKYLHTVIVVV 214
RF A +A W F CA IV + + R +++ VI+++
Sbjct: 222 RFKASSVLLAIAWVFACAMFIVYSFVYKLDRRGRWVGMVIMMI 264
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 7.7
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 190 PHLCKII--ENNYNYCMQIFKAPADNMCDIRHNIKR 291
PH + I ENN++ +Q ++ DN+ + IKR
Sbjct: 120 PHFGEAIDNENNFDIILQYIESQYDNVLEEESRIKR 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,279
Number of Sequences: 5004
Number of extensions: 43430
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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