Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc15c02
         (470 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2735|AAZ52804.1|  180|Drosophila melanogaster CG33724-P...    31   0.79 
AE013599-3313|AAF46788.1|  404|Drosophila melanogaster CG13500-P...    29   2.4  
AJ291605-1|CAC20097.1| 1351|Drosophila melanogaster gamma tubuli...    28   5.5  
AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-P...    28   5.5  
AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-P...    28   5.5  
AY118354-1|AAM48383.1| 1351|Drosophila melanogaster RE01412p pro...    28   7.3  
AE014296-2076|AAF49973.2| 1351|Drosophila melanogaster CG5688-PA...    28   7.3  

>AE013599-2735|AAZ52804.1|  180|Drosophila melanogaster CG33724-PA
           protein.
          Length = 180

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 25/96 (26%), Positives = 38/96 (39%)
 Frame = +2

Query: 128 NTLALKSINFLNM*YFNFATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQ 307
           N  A K   F N  Y +F   ++      TT   +C +  R  T    +G +       +
Sbjct: 90  NAAASKPCEFFNRYYISFFLVKSTESNLPTTGAEMCPF--RKGTYFVKNGVV-----STE 142

Query: 308 CWATCVCLATNRQCIRFLKNGFCCHTTKWSLSKANL 415
            W   V    NR  I +LKNG C    + ++S A +
Sbjct: 143 DWPPIVFKGLNRFTISYLKNGECVGGVQLTISIAEI 178


>AE013599-3313|AAF46788.1|  404|Drosophila melanogaster CG13500-PA
           protein.
          Length = 404

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 55  WICLRLNDAIIKRHVLVLSEY--ADLKYLGFEKYKFFE 162
           W  LRL++  I RHVL+L  +  A   YLG  + ++ E
Sbjct: 4   WHSLRLSNRYISRHVLLLLRFYLAQFYYLGLMRLRYDE 41


>AJ291605-1|CAC20097.1| 1351|Drosophila melanogaster gamma tubulin
           ring protein protein.
          Length = 1351

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 325 VLSNKPPMYSFLKEWFLLPHYKVVSLKSESLTWGISARGRVSI 453
           +L NK  + ++L E  L+ H K  +   ESLT+ IS+  ++ +
Sbjct: 247 ILRNKNLVLNYLNEATLIDHLKKAACGIESLTFPISSADKLEL 289


>AE013599-3283|AAM71018.2| 2968|Drosophila melanogaster CG13492-PB,
            isoform B protein.
          Length = 2968

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
 Frame = +2

Query: 233  CKYLKRPPT-----TCATSGTILNAHSKRQCWATCVCLATNRQCIRFLKNG 370
            C  L R PT     +C +S T+  A        T  C A N  CI  L+NG
Sbjct: 2776 CNELSRLPTEGECLSCDSSKTLECAQDPTAVLTTITCHAPNSDCITRLENG 2826


>AE013599-3282|AAF46766.2| 2931|Drosophila melanogaster CG13492-PA,
            isoform A protein.
          Length = 2931

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
 Frame = +2

Query: 233  CKYLKRPPT-----TCATSGTILNAHSKRQCWATCVCLATNRQCIRFLKNG 370
            C  L R PT     +C +S T+  A        T  C A N  CI  L+NG
Sbjct: 2739 CNELSRLPTEGECLSCDSSKTLECAQDPTAVLTTITCHAPNSDCITRLENG 2789


>AY118354-1|AAM48383.1| 1351|Drosophila melanogaster RE01412p
           protein.
          Length = 1351

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 325 VLSNKPPMYSFLKEWFLLPHYKVVSLKSESLTWGISARGRVSI 453
           +L NK  + ++L E  L+ H K  +   ESLT+ IS+  ++ +
Sbjct: 247 ILRNKNLVLNYLDEATLIDHLKKAACGIESLTFPISSADKLEL 289


>AE014296-2076|AAF49973.2| 1351|Drosophila melanogaster CG5688-PA
           protein.
          Length = 1351

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 325 VLSNKPPMYSFLKEWFLLPHYKVVSLKSESLTWGISARGRVSI 453
           +L NK  + ++L E  L+ H K  +   ESLT+ IS+  ++ +
Sbjct: 247 ILRNKNLVLNYLDEATLIDHLKKAACGIESLTFPISSADKLEL 289


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,382,657
Number of Sequences: 53049
Number of extensions: 496920
Number of successful extensions: 1477
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1601407269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)