Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15c01
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 205 9e-54
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 201 2e-52
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 148 1e-36
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 40 0.001
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 30 0.60
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 29 1.8
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 28 2.4
04_01_0440 + 5746474-5746662,5746895-5747251 28 2.4
01_01_0357 - 2816650-2817897 27 4.2
12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747 27 7.3
06_03_1146 - 28004896-28005554,28005664-28005844 27 7.3
04_01_0430 + 5651326-5651820,5651886-5652124,5652265-5652507,565... 27 7.3
03_01_0298 + 2318836-2319051,2321238-2323106 27 7.3
02_05_1089 + 34019162-34019164,34019249-34019465,34019558-340197... 27 7.3
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 27 7.3
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 27 7.3
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137 26 9.7
04_03_1015 - 21734381-21736534 26 9.7
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 205 bits (501), Expect = 9e-54
Identities = 90/122 (73%), Positives = 103/122 (84%)
Frame = +1
Query: 34 CRAIQMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKV 213
C ++ MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+
Sbjct: 166 CPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKI 224
Query: 214 GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDI 393
G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDI
Sbjct: 225 GIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDI 284
Query: 394 PG 399
PG
Sbjct: 285 PG 286
Score = 201 bits (490), Expect = 2e-52
Identities = 89/117 (76%), Positives = 100/117 (85%)
Frame = +1
Query: 49 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 228
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 229 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 399
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPG
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPG 116
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 201 bits (490), Expect = 2e-52
Identities = 89/117 (76%), Positives = 100/117 (85%)
Frame = +1
Query: 49 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 228
MGK RG+ RK HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 229 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 399
QPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPG
Sbjct: 60 QPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPG 116
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 148 bits (359), Expect = 1e-36
Identities = 67/102 (65%), Positives = 78/102 (76%)
Frame = +1
Query: 55 KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 234
K G+ RK HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 132
Query: 235 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 360
NSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 133 NSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +1
Query: 340 DEVLVAGFGRKGHAVGDIPG 399
DEVL++GFG KGHAVGDI G
Sbjct: 67 DEVLISGFGHKGHAVGDIRG 86
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 30.3 bits (65), Expect = 0.60
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = -1
Query: 374 PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFPFLMSCTRTHLRMAELGCLA-STPTFSRT 198
P P+T S S+ F P T+A + PF + + A STP F+ +
Sbjct: 277 PFAAKPSTGFGSTSTTLFNSPFNNTSAASSSPFASTTSIPLFTQTSSSLFANSTPGFASS 336
Query: 197 MPF 189
PF
Sbjct: 337 SPF 339
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -1
Query: 389 SPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFP 279
+PT P PNP ST SM F+ PS A FP
Sbjct: 3 TPTGNP-NPNPNPSTPFEVSMLFKPPSNAPAAAPIFP 38
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 371 LRPNPATSTSSFSSMWFRQPSRGT 300
L P+ +T T +FS WFR PS+ T
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWT 219
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 108 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 206
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>01_01_0357 - 2816650-2817897
Length = 415
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 388 HRRRDLYDRIPPLVLRRFLRCGLGNRHGG 302
H+ ++ DR+PPLVLR + G R G
Sbjct: 175 HQAQEHQDRVPPLVLRHAQQLGRARRVPG 203
>12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747
Length = 180
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 151 KWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 255
KW AN GG IVL + + ++ PNSA + C
Sbjct: 46 KWAAN-LGGTPPGSCIVLLHISLLSRVPNSAPKFC 79
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 401 TPGMSPTA*PLRPNPATSTSSFSS 330
TP SP+ P+ P PA +TS+ SS
Sbjct: 184 TPSPSPSVSPMAPAPAPTTSTPSS 207
>04_01_0430 +
5651326-5651820,5651886-5652124,5652265-5652507,
5653159-5653360,5653679-5654035
Length = 511
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 108 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 206
A+GG P GY+ G PF C KG+ PR
Sbjct: 456 AIGGMPAITVPAGYDGHGVPFGICFGGLKGYEPR 489
>03_01_0298 + 2318836-2319051,2321238-2323106
Length = 694
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 258 DAFADGRVGLLSFYTNFLEDDALCVRCTTERVSL 157
DAFA GLLS ++D LC+ C E VSL
Sbjct: 422 DAFAQCMGGLLSVV---VKDMRLCIECIDEGVSL 452
>02_05_1089 +
34019162-34019164,34019249-34019465,34019558-34019714,
34019935-34020071,34020387-34020490,34020593-34020688,
34020818-34020908,34021384-34021504,34021579-34021775,
34022605-34022705,34022778-34022833,34023689-34023778,
34023865-34023964,34024194-34024295,34024372-34024441,
34024696-34024850,34024944-34025068,34025126-34025144
Length = 646
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 376 DLYDRIPPLVLRRFLRCGLGNRHGGR 299
++Y + P LRR L GLG GG+
Sbjct: 57 EVYRAVGPRFLRRLLNTGLGKVEGGK 82
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 26.6 bits (56), Expect = 7.3
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 106 QRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 285
++W E K+ T++ F +HA G+++ G+E +++I K GK
Sbjct: 439 EKWRRAEVPKSDSVTQY----FKNITHANGVIIHPAGLECSL-HASIDALGSCYGDKQGK 493
Query: 286 KVTAFVPR 309
K A+V R
Sbjct: 494 KYRAWVDR 501
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -1
Query: 155 HFVPMWAFLNSLSAHRCSRRWFTCLRAVRI 66
H V WAFL + C F C+ V++
Sbjct: 577 HIVNSWAFLQPFTLQMCQVLQFACVNEVQL 606
>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
Length = 542
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 4 FFFFPSVADWCRAIQMGKPRGIRTARKHVNHRREQRWADKEFKK 135
FFF S A W ++ G P + V E++WA K K
Sbjct: 189 FFFLSSSAPWPCQVRWGGPPSKSSIADPVLTGEEEKWAAKLLDK 232
>04_03_1015 - 21734381-21736534
Length = 717
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 235 NSAIRKCVRVQLIKNGKKVTAFVPRDG 315
+SA+ C + L+ +GK++ A++ R+G
Sbjct: 492 SSALAACANIFLLNHGKQIHAYMIRNG 518
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,910,113
Number of Sequences: 37544
Number of extensions: 295637
Number of successful extensions: 830
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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