Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc15c01
(401 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 220 2e-57
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 220 2e-57
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 220 2e-57
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 74 2e-13
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 48 1e-05
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 48 1e-05
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 48 1e-05
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 48 1e-05
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 48 1e-05
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 48 1e-05
AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3 prot... 31 1.1
AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein. 31 1.1
AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein. 31 1.1
AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein. 31 1.1
AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein. 30 2.5
AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein. 30 2.5
AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein. 30 2.5
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein. 30 3.3
AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein. 29 7.7
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 220 bits (537), Expect = 2e-57
Identities = 101/117 (86%), Positives = 109/117 (93%)
Frame = +1
Query: 49 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 228
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 229 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 399
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPG
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPG 117
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 220 bits (537), Expect = 2e-57
Identities = 101/117 (86%), Positives = 109/117 (93%)
Frame = +1
Query: 49 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 228
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 229 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 399
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPG
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPG 117
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 220 bits (537), Expect = 2e-57
Identities = 101/117 (86%), Positives = 109/117 (93%)
Frame = +1
Query: 49 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAK 228
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 229 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 399
QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLVAGFGRKGHAVGDIPG
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPG 117
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 73.7 bits (173), Expect = 2e-13
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = +1
Query: 298 FVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPG 399
FVP DGCLN IEENDEVLVAGFGRKGHAVGDIPG
Sbjct: 1 FVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPG 34
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 48.0 bits (109), Expect = 1e-05
Identities = 32/81 (39%), Positives = 45/81 (55%)
Frame = +1
Query: 157 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 336
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 337 NDEVLVAGFGRKGHAVGDIPG 399
+ VLV G GR D+PG
Sbjct: 105 HQIVLVEG-GR----TQDLPG 120
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 48.0 bits (109), Expect = 1e-05
Identities = 32/81 (39%), Positives = 45/81 (55%)
Frame = +1
Query: 157 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 336
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 337 NDEVLVAGFGRKGHAVGDIPG 399
+ VLV G GR D+PG
Sbjct: 105 HQIVLVEG-GR----TQDLPG 120
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 48.0 bits (109), Expect = 1e-05
Identities = 32/81 (39%), Positives = 45/81 (55%)
Frame = +1
Query: 157 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 336
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 337 NDEVLVAGFGRKGHAVGDIPG 399
+ VLV G GR D+PG
Sbjct: 105 HQIVLVEG-GR----TQDLPG 120
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 48.0 bits (109), Expect = 1e-05
Identities = 32/81 (39%), Positives = 45/81 (55%)
Frame = +1
Query: 157 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 336
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 337 NDEVLVAGFGRKGHAVGDIPG 399
+ VLV G GR D+PG
Sbjct: 105 HQIVLVEG-GR----TQDLPG 120
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 48.0 bits (109), Expect = 1e-05
Identities = 32/81 (39%), Positives = 45/81 (55%)
Frame = +1
Query: 157 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 336
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 337 NDEVLVAGFGRKGHAVGDIPG 399
+ VLV G GR D+PG
Sbjct: 105 HQIVLVEG-GR----TQDLPG 120
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 48.0 bits (109), Expect = 1e-05
Identities = 32/81 (39%), Positives = 45/81 (55%)
Frame = +1
Query: 157 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEE 336
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 337 NDEVLVAGFGRKGHAVGDIPG 399
+ VLV G GR D+PG
Sbjct: 105 HQIVLVEG-GR----TQDLPG 120
>AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3
protein.
Length = 1217
Score = 31.5 bits (68), Expect = 1.1
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 353 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRTM 195
TSTS F++ F + S TNA+ +F + S T T + + + TP FS T+
Sbjct: 547 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFSTTI 601
>AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein.
Length = 957
Score = 31.5 bits (68), Expect = 1.1
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 353 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRTM 195
TSTS F++ F + S TNA+ +F + S T T + + + TP FS T+
Sbjct: 547 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFSTTI 601
>AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein.
Length = 877
Score = 31.5 bits (68), Expect = 1.1
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 353 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRTM 195
TSTS F++ F + S TNA+ +F + S T T + + + TP FS T+
Sbjct: 207 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFSTTI 261
>AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 31.5 bits (68), Expect = 1.1
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 353 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRTM 195
TSTS F++ F + S TNA+ +F + S T T + + + TP FS T+
Sbjct: 207 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFSTTI 261
>AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein.
Length = 901
Score = 30.3 bits (65), Expect = 2.5
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 353 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRTM 195
TSTS F++ F + S TNA+ +F + S T T + + + TP F+ T+
Sbjct: 231 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFATTI 285
>AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 30.3 bits (65), Expect = 2.5
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 353 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRTM 195
TSTS F++ F + S TNA+ +F + S T T + + + TP F+ T+
Sbjct: 208 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFATTI 262
>AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 30.3 bits (65), Expect = 2.5
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -1
Query: 353 TSTSSFSSMWFRQPSRGTNAV--TFFPFLMSCTRTHLRMAELGCLASTPTFSRTM 195
TSTS F++ F + S TNA+ +F + S T T + + + TP F+ T+
Sbjct: 208 TSTSEFTTESFTRGSTSTNAILTSFSTIIWSSTPTIIMSSSPSSASITPVFATTI 262
>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
Length = 1332
Score = 29.9 bits (64), Expect = 3.3
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +3
Query: 135 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 263
SPHG +M G P RP ES+C PQ RPC
Sbjct: 37 SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78
>AY186778-1|AAO27434.1| 727|Homo sapiens polymerase protein.
Length = 727
Score = 28.7 bits (61), Expect = 7.7
Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Frame = +1
Query: 58 PRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLE-KVGVEAKQP 234
P I R H N A++E KA +H L+ K V KQ
Sbjct: 421 PFYITHIRAHTNLPGPLTKANEEADLLVSSALIKAQELHALTHVNAAGLKNKFDVTWKQA 480
Query: 235 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGR 369
++ C + Q++ + PR C N + + D V FGR
Sbjct: 481 KDIVQHCTQCQVLHLPTQEAGVNPRGLCPNALWQMDVTHVPSFGR 525
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,820,360
Number of Sequences: 237096
Number of extensions: 1512525
Number of successful extensions: 3642
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3642
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2928276690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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